BAC Information

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BAC

Clone NameMSMg01-105F04
Chromosome8 (Build37)
Map Location 19,970,170 - 19,970,662
singlet/doubletsinglet
Overlap genenone
Upstream geneDefb40, Defb37, Defb38, Defb39, Defb12, Defb34, EG546038, Spag11, Defb14, Defb4, EG654452, Defb6, EG574081, Defb5, Defb3, Defb54-ps, LOC100040504, LOC100040514, Defb8, LOC100040528, LOC100041511, Defb7, LOC670326, LOC100040561, LOC624198, EG665730, 4930467E23Rik, LOC100041567, LOC547150, LOC100040599
Downstream geneEG665822, 6820431F20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-105F04.T7 (MSMg01no105_f04.b1)MSMg01-105F04.TJ (MSMg01no105_f04.g1)
ACCAG319708AG319709
length712715
length of high quality
(start - end)
496 (46 - 541)188 (143 - 330)
definitionCHROMAT_FILE: MSMg01no105_f04.b1 PHD_FILE: MSMg01no105_f04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:04:55 2005CHROMAT_FILE: MSMg01no105_f04.g1 PHD_FILE: MSMg01no105_f04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:04:55 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATCCGCGG
AATTCTCTGGAATTCCAGTTATGGACAGTTGTGAGCTGCCATGTGGGTAA
TAGCACTCAAAACTCAATGCACTACAAACAAAACTAGATCGCTTAACTAC
CAAGCCATCTCTCCATAATATTTATGTTACTTATACGATGTTATAGATAA
TACGGAAAGTTTTATCATAAGGTCTATTGTCAACTTTAATGCAAAAATAT
CACCAAGAAACATTCCGTCAATATGTCTCGTGTTGGCTAATGGACCAAAT
GAAGACATTTTGAACTGTAACCATGACCCTGCTCCCCCATATTCACCTTG
TGCACATGTGGTGTGTGCATTGATACACATATGAAGGACAGAGACTGACA
CTGTCTTCCTCTCATTTTCCTGTGTCCCACACATGAGGAATTAAGTGTGT
GGTGGTCAGAGGATTTGCCGCTTGACAGTTCTCTTCTGCCCCATTATGTG
TTCTGCGTCCCTCAGTTTTAAAGACATGTTCACTCAACCAAAACCCTTGG
TGTGGTTGATTTACTCTCTTGATGTACACTGACTCTCAGACTTTGCTGTA
AGCCACCTTTGTGGATCCCACATCTTCCCTTCATGATCTCCCGGCCAGTG
TTTTACCCGCTTGAGTTTTACCGATCACCCTAACCCCTTTATCCTAATTC
CTATCCTTAATT
CCTCACATTTTCCTCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXTT
CGGACCAAGAGGTGAACTATAGAAGGTGCCCACAAAAATCTGTAAAAGTT
GCAAATTGTATAAAAACCTTTCAAGAGTACAGAACATCTCACATAGGAAG
GAAAAGTGTAATATTGCTGCAGAAGAACAATGTTATAGGACTGTAGTGTT
CACTCTTGTTGACAATCAAATTAGCATAAATGAAGCGAAACACTGTTTTA
TTTTCTGTTGTATACTGACTCACTTTACTGGTCTGCTCTTTATCTTACAG
CATCCTTTGGGAACCTATGCTCACAGCAGGAGATTTTTTTTTGTGCTGGA
TCTTCTAGTAGGGTGAACATTTACAGTTACTCCTGACACTTCTTAGCTTA
TCCAGTGGTCTTCCAAGGATGTTTTAAAGGCTAACACTACTTTGTAACAA
CCTTCGATCCTTTTAATATGGATCCACCAAGTCCAGGCATTTCCAACTCA
TAAATTTAATTTTAAAAATTTGTACTTATCCCCTTACAACCTAATACCTG
TGCATTATTTCATTCTTTCCTATGTCCAGACAATACCTAGGCCATCTCTT
ACTACTTGCCAAGTGGCTCCTTTAATTCCGTTTTACATACACGAATTTTA
AACCCAACCCAGTTCTATGCCTAGTGCTTTCCCCCCTCCTTTAAAATAAT
GCCTCGATCTTACCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no105_f04.b1 MSMg01no105_f04.b1 CHROMAT_FILE:
MSMg01no105_f04.b1 PHD_FILE: MSMg01no105_f04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:04:55 2005
         (496 letters)



>mm_chr8_19969850_19970745
          Length = 896

 Score =  876 bits (453), Expect = 0.0
 Identities = 483/493 (97%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctctggaattccagttatggacagttgtgagctgccatgtgggtaatagcactc 63
           ||||| ||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 813 ggaatgctctggaattggagttatggacagttgtgagctgccatgtgggtaatagcactc 754

                                                                       
Query: 64  aaaactcaatgcactacaaacaaaactagatcgcttaactaccaagccatctctccataa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 aaaactcaatgcactacaaacaaaactagatcgcttaactaccaagccatctctccataa 694

                                                                       
Query: 124 tatttatgttacttatacgatgttatagataatacggaaagttttatcataaggtctatt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 tatttatgttacttatacgatgttatagataatacggaaagttttatcataaggtctatt 634

                                                                       
Query: 184 gtcaactttaatgcaaaaatatcaccaagaaacattccgtcaatatgtctcgtgttggct 243
           |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 633 gtcaactttaatgcaaaaatataactaagaaacattccgtcaatatgtctcgtgttggct 574

                                                                       
Query: 244 aatggaccaaatgaagacattttgaactgtaaccatgaccctgctcccccatattcacct 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 aatggaccaaatgaagacattttgaactgtaaccatgaccctgctcccccatattcacct 514

                                                                       
Query: 304 tgtgcacatgtggtgtgtgcattgatacacatatgaaggacagagactgacactgtcttc 363
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 513 tgtgcacatgtggtgtgtgcattgatacacatgtgaaggacagagactgacactgtcttc 454

                                                                       
Query: 364 ctctcattttcctgtgtcccacacatgaggaattaagtgtgtggtggtcagaggatttgc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 ctctcattttcctgtgtcccacacatgaggaattaagtgtgtggtggtcagaggatttgc 394

                                                                       
Query: 424 cgcttgacagttctcttctgccccattatgtgttctgcgtccctcagttttaaagacatg 483
           |||||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct: 393 cgcttggcagttctcttctgccacattatgtgttctgggtccctcagttttaaagacatg 334

                        
Query: 484 ttcactcaaccaa 496
           |||||||| ||||
Sbjct: 333 ttcactcacccaa 321


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space:   430596
Effective search space used:   430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)