BAC Information

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BAC

Clone NameMSMg01-105H19
Chromosome8 (Build37)
Map Location 95,377,811 - 95,378,075
singlet/doubletsinglet
Overlap genenone
Upstream gene4933436C20Rik, Irx5, Irx6, LOC100041325, Mmp2
Downstream geneAytl1, Capns2, LOC100040752, Slc6a2, EG244595, LOC382044, Es1, LOC676523, Ces3, Es22, AU018778, Ces1, 2310039D24Rik, Ces7, Gnao1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-105H19.T7 (MSMg01no105_h19.b1)MSMg01-105H19.TJ (MSMg01no105_h19.g1)
ACCAG319829AG319830
length756708
length of high quality
(start - end)
99 (80 - 178)265 (113 - 377)
definitionCHROMAT_FILE: MSMg01no105_h19.b1 PHD_FILE: MSMg01no105_h19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:05:08 2005CHROMAT_FILE: MSMg01no105_h19.g1 PHD_FILE: MSMg01no105_h19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:05:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATGAAACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATC
CGCGGAATTCAGGACCTTCTCAAGAGCAGTGGGTGCTCTTAGCCACTGAG
CTATCTCTGCAGCCCCCTTGGATATATTTGATAGCTGGAGCTCTGTAGCA
TTTCTTTCAAAGTGGAACCTCCTCCTGGTTTAGTTTGTCCCTCCTCCGTG
TCCTCCATGTTCCTTCTGCTGCAGGTCGCGCTGAGATTTCTGTCCTTCAA
AAGCTAAATGATAGTCCATGTCGTCCGCACATCTTATGTGTTGTTAGCTT
GTCTATCATGAACTATGATTGCTTCTGCCTTTTGCATAATGATAGCGATG
TTGCTTACTATGCGTTTTCACTATTATTCTCACTGTTTTACATTTTCTGA
ACTGATGAAATTGCTGTAAAATTATATTGTAATTTTTGTTTTTTACATTT
TCACATGTTCTCATTTTTTATCGTAATACATACATTACAACATCTTTACC
AAATCCCTAATTCTTTTTTCTAACCTACTTACTATCCTTTATTATTCTTG
CTCCCTTACCATATTCTTACTTCTATTACCACTATTCCTCCTTCATCGTA
CTCCCCTCCACTCTATCCATATTCTCTTTTCTCCTCATTATTCCCCTTTC
ATTCGATCTCTTATCTATACAACTAAACCTATTCCAATATCAGCACGTAT
CCTACTCCCTACCTTCTTTCATAAATTAACTTACCACTTTCCTTCAACCA
TACCCT
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATTGACAAATCACTACATGCGGAGGTCG
GGTGGAGGGGCGAGGACTAGAGGTAGAAGAAGCTCCCACATTTATTGTGG
CTATGTTTAGAAAGCAGGCACATCATCCCCTCAAAATGTGTTTCCTTGGG
GAGGTTTTAGGGGTGACGGAAGCTGCTGCTGCTGCTGTCTGCGGTCTGTG
GTGGCAGCTGCGGCAACTCTGGGTTTATGTTCTTCATCATTTGGCCCCAG
CTCAAATTTTGTTTCTAACAGTCTACTCTCTGATCCCGACCAACCACTTT
CCTCTGGGCCCTGCTGCCTCTCCTCGGGAAGTCTGTCCAGGCGATCCTTT
AATGGCTCTTAAAAGATGACTATGTGTGGTTGCTGGGAGCTGTCTTTCTC
GGAAACTTGACTGTTCATTGGGATAAGGTAAACCCTTTGCTGGCTTTTCC
CTCCGCCTATTTATTTCCTCCTTATCCCCCCCATAATCTCCCACTTGGCC
CCTTTGTTCTTGGCCCCCTCCCCCTTTCCCCCTATACACATTTTTCGTCC
CATTTCATCCGTCCCCCCCCCTTACAACCCCCTCTCCTTTACTTTTCCGT
GCTCTTCCTTTGCTCTTCGTTCTCTCCGCTTTTCCCTTCATCCCTGCGCC
CCTTTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no105_h19.g1 MSMg01no105_h19.g1 CHROMAT_FILE:
MSMg01no105_h19.g1 PHD_FILE: MSMg01no105_h19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:05:08 2005
         (265 letters)



>mm_chr8_95377611_95378275
          Length = 665

 Score =  497 bits (257), Expect = e-145
 Identities = 263/265 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggactagaggtagaagaagctcccacatttattgtggctatgtttagaaagcaggcaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 aggactagaggtagaagaagctcccacatttattgtggctatgtttagaaagcaggcaca 406

                                                                       
Query: 61  tcatcccctcaaaatgtgtttccttggggaggttttaggggtgacggaagctgctgctgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 tcatcccctcaaaatgtgtttccttggggaggttttaggggtgacggaagctgctgctgc 346

                                                                       
Query: 121 tgctgtctgcggtctgtggtggcagctgcggcaactctgggtttatgttcttcatcattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 tgctgtctgcggtctgtggtggcagctgcggcaactctgggtttatgttcttcatcattt 286

                                                                       
Query: 181 ggccccagctcaaattttgtttctaacagtctactctctgatcccgaccaaccactttcc 240
           ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 285 ggccccagctcaaattttgtttctaacagccgactctctgatcccgaccaaccactttcc 226

                                    
Query: 241 tctgggccctgctgcctctcctcgg 265
           |||||||||||||||||||||||||
Sbjct: 225 tctgggccctgctgcctctcctcgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 265
Length of database: 665
Length adjustment: 9
Effective length of query: 256
Effective length of database: 656
Effective search space:   167936
Effective search space used:   167936
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)