BAC Information

Click to search

BAC

Clone NameMSMg01-105I21
Chromosome8 (Build37)
Map Location 9,499,917 - 9,500,565
singlet/doubletsinglet
Overlap geneTmem28
Upstream geneLOC100039836, Efnb2, 9430010O03Rik
Downstream geneLig4, Abhd13, Tnfsf13b, Myo16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-105I21.T7 (MSMg01no105_i21.b1)MSMg01-105I21.TJ (MSMg01no105_i21.g1)
ACCAG319878AG319879
length7001,678
length of high quality
(start - end)		655 (35 - 689)---
definitionCHROMAT_FILE: MSMg01no105_i21.b1 PHD_FILE: MSMg01no105_i21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:05:13 2005CHROMAT_FILE: MSMg01no105_i21.g1 PHD_FILE: MSMg01no105_i21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:05:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATTTGCGGCGCTATACGACTCCTATAGGTACAGGTCCGCGGAATTCAACC
AGCAGTTGAAGTTTCCAGGAAACTGTCACTTTCCCATCAGGCTGGGTCAC
TTTGGGACAAGAGCTCAGCTTCCTTTGTAACTTAAACTCTGACCCTTTAA
AATCTGATCCTCATGGCTGATCCTTAAACTCATTTAGCGTGTTATCCCTA
AATATCCCAGAACCTTCCAAATAGAGAACAAGCGTTCAAAACCTGAGCAG
TAGTGGTGGCATGATGACATTTCAGATTCACACCACTGCAGTATATAGTA
GTTGTTAGGACACTCAGCAAATTCTGATGCAGTACTTCAGCTAGAGGAGA
GAGCTGGACTCACAGACTCAGTTGCACCTTACTCTTAAGGCAGAAAAACG
TAAAAGAATATTAAGGACCAAATGATCAGGATGTAAAAATACTGATGAGG
GAATTCAAAACCCAGAGTATATGTGATGACCTAAATAGTAACCAATATAA
AACATTTAAAAATGGGTGAATTGTTGCTTGAATAATATCTATTAGTAGTA
GCTAGTAGTACTAAAAATATCAGGTTAAAGAGCATGTGCAGAAATCAAGG
AATTATGTTCTTTCAACTGCTCTGTGCTCTACAGGGTAATTATCTTATGT
ACATAGTCATACACACCTACACAGATACATGCATGCACATCATACATGTA


AACAAAGGCAGTCATATGTGCTACTTAGTAATGGTAAAAGAAACGATGGC
GACTTGATAACANNTCGTATCTGGGAGAGAGAGGAGAAANNATANNACNA
AATATGAGGATAATCTCTCCCATCAATCACAAGAGGAGAGAGTTGACTAC
GNATATATATAAAAGATACAGAACTCTCATACATTACCATNCGATTATAT
CATATATAATATATATTAATAAACCTATCCCATCCACCTCACACNTAAAT
AACTAAAAATATCACACACCTAACACACACAAATCACACATATTATACAT
ACTACTAAATACGACCATAACACCATCTCATATCATACGGAGAGCCTATA
NTGCTCCATATTTATTCATCTCTTACTATATATATACACAAATAATAACA
TACACATATTTCATATATTATCACAAAGTCTTATACACCCAGGCGCGCCN
ACGTCTGCTTATTACTCCGGCTATTACGTATCGTATGTACGCCTATATTC
NGCCTCTATTACGCCTTCTACATCGAGTCGCGGCGAGTCGAGTGTGATGC
GTACGCGTAGGCTGATAGTCACAATGTATACGCCAGTGCCATTATGTCGC
NGCAGCACTCTATCTGCGCTATGAGTGCACTCACGCAGTATAGCGCGCGT
GCGGTTCGCGACGGGTACTATATATACCGTCTGCTGTTTATTGCGCACNT
ATCGCTAGCGTGCGCGCGTATACGTCAAACGTATCAGAGCGATTTGTTGT
GTATGGACTAGTACANANATCANGTGTAAGCGTGCGTTGTATTGCGCGCG
GCGNCGCGATCGCACTCCGCCCGGGTATTGAATAAAGTTGACGATGATGA
AGTGCGTCGCGTGAGCAGTCGANGAGAGGGATAGGGAGATGTTCATAGAT
GTGCTGGTGATGAGATNCGCTGATATCCGTATGAGCGCGTTGTACGGCGT
CACGCCGTTTGNCGTGTGTGTCGATCGGCGTCTGATGGTGCGGTCGGGTG
CGCGTGAGCNCGGGCGTAGGTTGGNTTATGAGTACTCGGCCGCTTAGATG
CCTCATTCTCAGGATTCGTACATAATCCGTCGCTCGACGCGCGTGTAGAT
GCGCGAACCTGCGTGTGGTGTACGCTGGAGTGTGAGTGAGCGCGAGCTAG
ATAAGGCAGGGAGGAAGGCTACGCGTACACGACATANAAAGCATNCGATA
TACCGATATACANCTATATGANNTAGCATGCTCGGCAGNCANTAGTGCTG
ATGCGCGAGTAGACGATAGTGTGACTGNGAAGGCGTATGCGNGCGANGNT
GCNAGGCTGACGATATAGAGTAGAGCATGTGTGAGATCGGCATGGAGATG
GCGTGAGCNTGTCACACGTGAGGCGTGGNCTATGAGCGATCGCANGACTG
CGTGAGTGGGCACGACNAGGNAGNTGCATGAGTGCGACGCGTCCCGTCGC
TGCTGNCGCGTGCGCGCNCGGTAGTGACGCGTGTGAANGCATCGACTAGA
GCGCTGCTAGTACCGATGTATACAGGAGACACGGCTCTTTGATACGACGA
GTNGAGCGAATCATACGATCATGCGAATAGATAGCTATGTGACGAAGAGA
TCGAGCACTGACGTCGANAGTATACAGCGAAGCATATGATATGACGACGC
TCGCACACACTCTGCACGAGTATATNTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no105_i21.b1 MSMg01no105_i21.b1 CHROMAT_FILE:
MSMg01no105_i21.b1 PHD_FILE: MSMg01no105_i21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:05:13 2005
         (655 letters)



>mm_chr8_9499711_9500765
          Length = 1055

 Score = 1224 bits (633), Expect = 0.0
 Identities = 645/649 (99%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattcaaccagcagttgaagtttccaggaaactgtcactttcccatcaggctgggtcac 66
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 855 gaattcaaccagcagttgaagtttccaggaaactgtcactttcccatcaggctgggtcac 796

                                                                       
Query: 67  tttgggacaagagctcagcttcctttgtaacttaaactctgaccctttaaaatctgatcc 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 tttgggacaagagctcagcttcctttgtaacttaaactctgaccctttaaaatctgatcc 736

                                                                       
Query: 127 tcatggctgatccttaaactcatttagcgtgttatccctaaatatcccagaaccttccaa 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 tcatggctgatccttaaactcatttagcgtgttatccctaaatatcccagaaccttccaa 676

                                                                       
Query: 187 atagagaacaagcgttcaaaacctgagcagtagtggtggcatgatgacatttcagattca 246
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 atagagaacaagcgttcgaaacctgagcagtagtggtggcatgatgacatttcagattca 616

                                                                       
Query: 247 caccactgcagtatatagtagttgttaggacactcagcaaattctgatgcagtacttcag 306
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 caccactgcagtatacagtagttgttaggacactcagcaaattctgatgcagtacttcag 556

                                                                       
Query: 307 ctagaggagagagctggactcacagactcagttgcaccttactcttaaggcagaaaaacg 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 ctagaggagagagctggactcacagactcagttgcaccttactcttaaggcagaaaaacg 496

                                                                       
Query: 367 taaaagaatattaaggaccaaatgatcaggatgtaaaaatactgatgagggaattcaaaa 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 taaaagaatattaaggaccaaatgatcaggatgtaaaaatactgatgagggaattcaaaa 436

                                                                       
Query: 427 cccagagtatatgtgatgacctaaatagtaaccaatataaaacatttaaaaatgggtgaa 486
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 435 cccagagtatatgtgatgacctaaatagtaaccaatataaaatatttaaaaatgggtgaa 376

                                                                       
Query: 487 ttgttgcttgaataatatctattagtagtagctagtagtactaaaaatatcaggttaaag 546
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 ttgttgcttgaataatatctattagtagtagctagtagtactaaaaatatcaggttaaag 316

                                                                       
Query: 547 agcatgtgcagaaatcaaggaattatgttctttcaactgctctgtgctctacagggtaat 606
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 315 agcatgtgcagaaatcaaggaattatgttctttcaactgttctgtgctctacagggtaat 256

                                                            
Query: 607 tatcttatgtacatagtcatacacacctacacagatacatgcatgcaca 655
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 tatcttatgtacatagtcatacacacctacacagatacatgcatgcaca 207


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1055
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1045
Effective search space:   674025
Effective search space used:   674025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |