BAC Information

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BAC

Clone NameMSMg01-105K13
Chromosome8 (Build37)
Map Location 8,439,117 - 8,439,291
singlet/doubletsinglet
Overlap geneLOC100039836
Upstream genenone
Downstream geneEfnb2, 9430010O03Rik, Tmem28
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-105K13.T7 (MSMg01no105_k13.b1)MSMg01-105K13.TJ (MSMg01no105_k13.g1)
ACCAG319954AG319955
length705714
length of high quality
(start - end)
185 (66 - 250)36 (68 - 103)
definitionCHROMAT_FILE: MSMg01no105_k13.b1 PHD_FILE: MSMg01no105_k13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:05:21 2005CHROMAT_FILE: MSMg01no105_k13.g1 PHD_FILE: MSMg01no105_k13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:05:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGAATCCGCGGAATT
CAGCATTACTCCCAAGTGACGGACAGACTAACGGTGTGAGCCTGCATGAA
GCCTCTCTGATGTCTGGAATGTTAAAGTTTGAGAGAACATTTTTGGTGAA
AGGAACCTTTTCCCTCTGTTACTTTATCTTATTTTTACTCTTTTTTTAAG
ATTTATTTATTTGTTATATGTAAGTACACTGTAGCTGTCTTCAGACACCC
CATAAGAGGGCATCAGATCTCATTAAGGATGGTTGTGAGCCATCATGTGG
TTGCTGGGATTTGAACTCTTTTACCTTCACAACACCAGTTGACGCTCATT
AACCGCTGAGCCATCTCTCCAGCCCTTATTTTTACTCTTTAATGATGACA
TGAGAGCTGTAATGTTACTATATTGGAGCATGAGCTAAAAATCTATTGGA
TATGATGACTGGCGATTACTGGCCATGTTGATTCAACCGCATATTTCTTC
GTGAGCATTGTGAGCCTTGCGTGCACGATGTGCTTGTGTGCACCTTTCTA
GTTGTGTATATTTGTCTTCTTGACCACCGAATGAGCTTATCATTTCTCAT
GATAACTGTTTAGGTTTATCCTGTTTTTTAATTCTCCTCCCTACTTTTAC
CATTCTGTTTTTCCCGCATTCTTACCTTTCTGTGTTTTTATGCCAAACTT
CCAAC
ATGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTGTGGTGTGATTAAACACACTAACCATGTGCAC
TTCAGAGGGGCTGATGTGCCGTTGTGGGTGTCATAGGATCAGGTAAGATC
TGAATGAAGGTCTCACGGTGCCCACTCTTGATCAGGCGCAACGGGACTGG
AGGCTGGAAAAGAGGACATTCCACCCTATCTAACAACATCCTACCTATTT
ACTTATTTATTTACTTATTCATTCATTCATTCACCTACTTATCCATCTAT
CCTCTAAACGCTATCCTACTACGTACTGGACCTATGGTCCCGTGTGGATA
CTTGATTAGTGTACCTCCACGACCATCTAAATCTGTACCCGGGACCTCTG
GTAAAAGCTGCATGTGCAGCCGATCATCATCTTCTGCACATCTATGCTAA
TATGGTTACATGTTTCTGTCACAAATCTGCCAGTATCTACATCTCCTTTT
CCTTTCTACTCACTCAAACCTTAACAACCAGATTCCTCAAGTCCTCGTTA
GGATAGACCGAAGCCTGTTCTCGTTCCCATCCATAATCCTTTGCCTCACC
TGTACACACGACACACTCACTTCCTTCCCCTATAGTCATTATTACCTTTA
TATCTTCCCACTCCTAACCTCATATTTCCACCCCTATTCCTCCCAATTTA
TATACACTAACAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no105_k13.b1 MSMg01no105_k13.b1 CHROMAT_FILE:
MSMg01no105_k13.b1 PHD_FILE: MSMg01no105_k13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:05:21 2005
         (185 letters)



>mm_chr8_8438907_8439491
          Length = 585

 Score =  339 bits (175), Expect = 9e-98
 Identities = 175/175 (100%)
 Strand = Plus / Plus

                                                                       
Query: 11  gactaacggtgtgagcctgcatgaagcctctctgatgtctggaatgttaaagtttgagag 70
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 gactaacggtgtgagcctgcatgaagcctctctgatgtctggaatgttaaagtttgagag 270

                                                                       
Query: 71  aacatttttggtgaaaggaaccttttccctctgttactttatcttatttttactcttttt 130
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 aacatttttggtgaaaggaaccttttccctctgttactttatcttatttttactcttttt 330

                                                                  
Query: 131 ttaagatttatttatttgttatatgtaagtacactgtagctgtcttcagacaccc 185
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 ttaagatttatttatttgttatatgtaagtacactgtagctgtcttcagacaccc 385


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 185
Length of database: 585
Length adjustment: 8
Effective length of query: 177
Effective length of database: 577
Effective search space:   102129
Effective search space used:   102129
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)