BAC Information

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BAC

Clone NameMSMg01-105M22
Chromosome8 (Build37)
Map Location 98,399,362 - 98,399,704
singlet/doubletsinglet
Overlap geneGot2
Upstream geneDok4, LOC100040942, Ccdc102a, Gpr114, Gpr56, Gpr97, Gm770, Katnb1, Kifc3, BC016201, Map1lc3-ps6, 1700055M20Rik, Zfp319, AA960436, Mmp15, Gtl3, Csnk2a2, 4933406B17Rik, Ccdc113, 4931432M23Rik, EG546088, LOC100041040, Gins3, LOC547022, Ndrg4, Setd6, Cnot1, LOC100041953, LOC100041088, BC031853, LOC100041972
Downstream geneLOC667445
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-105M22.T7 (MSMg01no105_m22.b1)MSMg01-105M22.TJ (MSMg01no105_m22.g1)
ACCAG320064AG320065
length708702
length of high quality
(start - end)
---343 (76 - 418)
definitionCHROMAT_FILE: MSMg01no105_m22.b1 PHD_FILE: MSMg01no105_m22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:05:33 2005CHROMAT_FILE: MSMg01no105_m22.g1 PHD_FILE: MSMg01no105_m22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:05:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCACAAATACGAGGAA
TTCCTTATTTTCCCAAAATCCTATTATGTTATTTTGAGGAGTAAGAGTCG
AGATGGAGTCTCTCTCTGCTAGTAGAACTCACTATATCAGGCTGCTCTCA
AACTCAAGAGATACTTGCTTATCCCCTCCCCCACCATACCCCCTGTTTCT
ATGCCCAACTAAGACTTATTTACTACAAATAACCACCTTGCGCAGAAGTC
CGACACGACCGCTAATACAAATATGCCTCCATTCATGCCAACAGATCACA
CAGGACGTTTTCTCATTTTCCTGTAAGAGTCTCCGACACTTACAGGCATT
AATAATTCCTTACTGCATACCCTATTACAGCACTGTCTGAAGGACCTGCC
ACGCTGCTTGAAAGTAAGAAAACACCAAATAATTATAACTTTGACGGCAT
ATTGAACCACATGCCAACCTTGTCTCAACAGCAATCGCCAGAGAATGACT
AAAAACGCATACGTGACAGTACATACTCGTCTCCCTGAGTGCTATATAGA
ATCTAACTGCTCACCAACTATGCGTGTTATCACTATAGAGACGATCAATC
TGTCAGATCAAGACCATAGATACCTGAACCCGTAAAATTTACTTCGTATA
AAAGACAGCTTTACTAAGGACATGAACGCCTCTCTATCATTAGCTAGGAA
CATGGAAT
CCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTCCCCGAATTCTGTAAGGCTTCTGCAGAACTGGCCCT
GGGCGAGAACAATGAAGTGTTGAAACGCGGCCGGGTAAGCCAGCGGGACG
GGCTTGAGCTTGATACAGGAAATGTTAACTCAGTTAATATGTGTGTGATG
GTGACCACACTTACTGATAGGAAGTTTAACGATATCGATTATCTTGAAGA
TTTGACAGAATTTGACCGATAACCTTGGCCCTGCTTGGTGGTGGTGTTGA
TGACTTTCATGTTTTTTATACCGCATTTTGTTACAAATGCCTCCCTGGGC
CTATAATTAGTCCCCACAATCATGTGTTAAGCTTCCAGCTTATATGGGAG
AAGCAGCCATGAGTATGGGGGCAGGGCTGGTATGGCTGTCCTCTGCTGCC
CTGTCCCAGGGCATGGACAGAGAGGCCGTGATCCTAACATAAAGACACTG
ACTGTGGGTTACTTTCTTTTTGTAAGACAAAGGGAAGATGTGGCTTAATG
GAAATACTTTCAAATTTATTTTCCTGATTTAAAAGCATGAAGTATTGATA
TTTAACTAGCGGAATACTAGCCTCTAATGCGTAACACGCCCTAGGCTCCA
GCCCTCAGCACTTACAAGAAAAATATATTTGACTACTATTTTTTTTCTAA
CC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no105_m22.g1 MSMg01no105_m22.g1 CHROMAT_FILE:
MSMg01no105_m22.g1 PHD_FILE: MSMg01no105_m22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:05:33 2005
         (343 letters)



>mm_chr8_98399162_98399904
          Length = 743

 Score =  596 bits (308), Expect = e-175
 Identities = 335/344 (97%), Gaps = 2/344 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtaaggcttctgcagaactggccctgggcgagaacaatgaagtgttgaaacgcggccggg 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 543 gtaaggcttctgcagaactggccctgggcgagaacaatgaagtgttgaaaagcggccggg 484

                                                                       
Query: 61  taagccagcgggacgggcttgagcttgatac-aggaaatgttaactcagttaatatgtgt 119
           |||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 483 taagccagcgggtcgggcttgagcttgatacga-gaaatgttaactcagttaatatgtgt 425

                                                                       
Query: 120 gtgatggtgaccacacttactgataggaagtttaacgatatcgattatcttgaagatttg 179
           || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 gtaatggtgaccacgcttactgataggaagtttaacgatatcgattatcttgaagatttg 365

                                                                       
Query: 180 acagaatttgaccgataaccttggccctgcttggtggtggtgttgatgactttcatgttt 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 364 acagaatttgaccgataaccttggccctgcttggtggtggtgttgatgactttcgtgttt 305

                                                                       
Query: 240 tttataccgcattttgttacaaatgcctccctgggcctataattagtccccacaatcatg 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 tttataccgcattttgttacaaatgcctccctgggcctataattagtccccacaatcatg 245

                                                       
Query: 300 tgttaagcttccagcttatatgggagaagcagccatgagtatgg 343
           |||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 244 tgttaagcttccagcttagacgggagaagcagccatgagtatgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 743
Length adjustment: 9
Effective length of query: 334
Effective length of database: 734
Effective search space:   245156
Effective search space used:   245156
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)