Query= MSMg01no106_b11.b1 MSMg01no106_b11.b1 CHROMAT_FILE:
MSMg01no106_b11.b1 PHD_FILE: MSMg01no106_b11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:06:01 2005
(722 letters)
>mm_chr8_65254145_65255266
Length = 1122
Score = 1305 bits (675), Expect = 0.0
Identities = 711/723 (98%), Gaps = 1/723 (0%)
Strand = Plus / Plus
Query: 1 tggaatgtcaacagcacattcccatcttccccttttgagttccacttcacaaagtctcag 60
||||||||||||||||||| |||||||||| | ||||||||||||||||||||||||||
Sbjct: 201 tggaatgtcaacagcacatccccatcttccaatcttgagttccacttcacaaagtctcag 260
Query: 61 tgataataataagattatatttgttgtcttgtttgagaatctcaatttaagtttagttat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgataataataagattatatttgttgtcttgtttgagaatctcaatttaagtttagttat 320
Query: 121 tatccatccacagtgggttggtttatagatactgaatccataaatatacagaaatgatag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatccatccacagtgggttggtttatagatactgaatccataaatatacagaaatgatag 380
Query: 181 gaccttaagccacagtcctgaaatccaatttcaacataaagatggcattttcaaatacag 240
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 381 gaccttaagccacagtcctgaaatccaatttcaacatacagatggcattttcaaatacag 440
Query: 241 atgcactcttatgaatttatttttctttcctgtagccccaaagctctgggataatctgtt 300
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 441 atgcactcttatgaatttatttttctttcctgtagccccaaagctatgggataatctgtt 500
Query: 301 ataaagttgatataatacaaggttccattgcatcttttgggtttataggtttaagactcg 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ataaagttgatataatacaaggttccattgcatcttttgggtttataggtttaagactca 560
Query: 361 gagaaatgaaaaacatatgactttttgtttgtttgtttgttttgcatgacttattcctat 420
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 561 gagaaatgaaaaacatatgacttattgtttgtttgtttgttttgcatgacttattcctat 620
Query: 421 ttttatcattagtaaaatatttccattacatttagcatattttgtactcataacaatttt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 621 ttttatcattagtaaaatatttccattacatttagcatattttgtactcataaaaatttt 680
Query: 481 taacagtaaatatgcaatttctttttttaaaagtaatagttttagaataacagaaacatg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 taacagtaaatatgcaatttctttttttaaaagtaatagttttagaataacagaaacatg 740
Query: 541 ctagtatcaggaatacttttaactctatcctactgcctatgataactatgaataaaaaaa 600
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 741 ctagtatcaggaatacttttaactctatcctactgcctacgataactatgaataaaaaaa 800
Query: 601 agaacttgttacaggatggaggaacacacaagttattctgaaaaaatttgaaaaatatta 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 agaacttgttacaggatggaggaacacacaagttattctgaaaaaatttgaaaaatatta 860
Query: 661 tattttatgttggcaaa-ggatatgtgacaaattataatacaatatggacaatatggaca 719
|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 tattttatgttgtcaaaaggatatgtgacaaattataatacaatatggacaatatggaca 920
Query: 720 aat 722
|||
Sbjct: 921 aat 923
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 722
Length of database: 1122
Length adjustment: 10
Effective length of query: 712
Effective length of database: 1112
Effective search space: 791744
Effective search space used: 791744
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no106_b11.g1 MSMg01no106_b11.g1 CHROMAT_FILE:
MSMg01no106_b11.g1 PHD_FILE: MSMg01no106_b11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:06:02 2005
(557 letters)
>mm_chr8_65425876_65426832
Length = 957
Score = 884 bits (457), Expect = 0.0
Identities = 473/481 (98%), Gaps = 5/481 (1%)
Strand = Plus / Minus
Query: 82 tatctctctttgcatcatgtttaccatgagatgagtgtcttcctctgccctcatggttcc 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 957 tatctctctttgcatcatgtttaccatgagatgagtgtcttcctctgccctcatggttcc 898
Query: 142 attgccatggcagtctagactaccatgtgactgggccctttatgggctaaaacttctgaa 201
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 897 attgccatggtagtctagactaccatgtgactgggccctttatgggctaaaacttctgaa 838
Query: 202 atcatgagcc-----agaccatttctcctttaagttgagtcctttatgtgtggtatttat 256
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 837 atcatgagccagactagaccatttctcctttaagttgagtcctttatgtgtggtatttat 778
Query: 257 cacagggacagagagctaacacagagagctatcaaatacagaactttgatatttaagggt 316
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 777 cacagggacagagagctaacacagagagctagcaaatacagaactttgatatttaagggt 718
Query: 317 ctgtaagtttcaagaatgaataggcttcactagattttctttctttctgtgtggatatgt 376
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 717 ctgtaagtttcaagaatgaataggcttcactacattttctttctttctgtgtggatatgt 658
Query: 377 ctctgaatcattcagggtgtttctgttctttgattctgctgcctccttgactctgctttc 436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 ctctgaatcattcagggtgtttctgttctttgattctgctgcctccttgactctgctttc 598
Query: 437 tacttgctagctcagtacaagagagaattcacctgtaattaaagtcaagatgagggaatg 496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 tacttgctagctcagtacaagagagaattcacctgtaattaaagtcaagatgagggaatg 538
Query: 497 gttaattcaggaattctgctacgttactgtgaaagtcactcttcctaagctactttagat 556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 gttaattcaggaattctgctacgttactgtgaaagtcactcttcctaagctactttagat 478
Query: 557 g 557
|
Sbjct: 477 g 477
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 957
Length adjustment: 10
Effective length of query: 547
Effective length of database: 947
Effective search space: 518009
Effective search space used: 518009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
