Query= MSMg01no106_g16.b1 MSMg01no106_g16.b1 CHROMAT_FILE:
MSMg01no106_g16.b1 PHD_FILE: MSMg01no106_g16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:06:48 2005
(723 letters)
>mm_chr8_44140765_44141887
Length = 1123
Score = 1355 bits (701), Expect = 0.0
Identities = 715/723 (98%), Gaps = 6/723 (0%)
Strand = Plus / Minus
Query: 1 aatggggttatttgattttctggactccacccccttgagttctttatatatatattggat 60
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 794 aatggggttatttgattttctggactccaccttcttgagttctttatatatatattggat 735
Query: 61 attagtcccctatctgatttgagataggtgaagatcctttccaaatctgttggtggtctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 attagtcccctatctgatttgagataggtgaagatcctttccaaatctgttggtggtctt 675
Query: 121 tttgtcttattaacggtgtattttgccttgcagaagctttgcaattttatgaggtcccat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 tttgtcttattaacggtgtattttgccttgcagaagctttgcaattttatgaggtcccat 615
Query: 181 ttatcgattctcgatcttacagcacaagccattgttgttctattcaggaatttttcaatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 ttatcgattctcgatcttacagcacaagccattgttgttctattcaggaatttttcaatg 555
Query: 241 gttgcttcttagaaactatatagcaataaaataaaaatgcagacaagttgtgtttaacac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 gttgcttcttagaaactatatagcaataaaataaaaatgcagacaagttgtgtttaacac 495
Query: 301 agataagtttctaaaggcaccacattatactgagatccatagtccagttctcttgaacaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 agataagtttctaaaggcaccacattatactgagatccatagtccagttctctt------ 441
Query: 361 gaacaagaacaagaacaagaacaagaacaagaacaagaacaagaacaagaacaagaacaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gaacaagaacaagaacaagaacaagaacaagaacaagaacaagaacaagaacaagaacaa 381
Query: 421 gaacaagaacaagaacaagaacaagaacaagaacaagaacaagaacaagaacaagaacaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gaacaagaacaagaacaagaacaagaacaagaacaagaacaagaacaagaacaagaacaa 321
Query: 481 gaacaagaacaagaacaagaacaagaacaagaaagaacaagaacaagaaaagctcttaat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gaacaagaacaagaacaagaacaagaacaagaaagaacaagaacaagaaaagctcttaat 261
Query: 541 gtgcccagccttcctagttgcctcccttgttcttctaaccatactcctttgtgctcctgg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gtgcccagccttcctagttgcctcccttgttcttctaaccatactcctttgtgctcctgg 201
Query: 601 acccccatttttactatcatttacacatgtttagtaactccttcctttctcaaaatctct 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 acccccatttttactatcatttacacatgtttagtaactccttcctttctcaaaatctct 141
Query: 661 tctgtgtctctatgattcctttcttgtttcatgatctacctctacacttataacaaatat 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140 tctgtgtctctatgattcctttcttgtttcatgatctacctctacacttataacaaatat 81
Query: 721 ata 723
|||
Sbjct: 80 ata 78
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 243
Number of extensions: 42
Number of successful extensions: 42
Number of sequences better than 10.0: 1
Number of HSP's gapped: 41
Number of HSP's successfully gapped: 1
Length of query: 723
Length of database: 1123
Length adjustment: 10
Effective length of query: 713
Effective length of database: 1113
Effective search space: 793569
Effective search space used: 793569
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no106_g16.g1 MSMg01no106_g16.g1 CHROMAT_FILE:
MSMg01no106_g16.g1 PHD_FILE: MSMg01no106_g16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:06:48 2005
(531 letters)
>mm_chr8_43985156_43986085
Length = 930
Score = 1004 bits (519), Expect = 0.0
Identities = 528/531 (99%), Gaps = 1/531 (0%)
Strand = Plus / Plus
Query: 1 tttaaaatgaaatccagcatatatccttatatccgactgatgctattgaatgcatatttt 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 tttaaaatgaaatccagcatatatccttatatctgactgatgctattgaatgcatatttt 260
Query: 61 ctcctggagtaagttaaagagaagaagtactatcctacagaatatctaatctcagagcat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcctggagtaagttaaagagaagaagtactatcctacagaatatctaatctcagagcat 320
Query: 121 ttttttcatagtcctatgttatattaattatcttcttgtgacagataggaaaataaattt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttttcatagtcctatgttatattaattatcttcttgtgacagataggaaaataaattt 380
Query: 181 gctgtaaatatttacactaaatatattccaaggtttaaaaagtcaaattacatctcaagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctgtaaatatttacactaaatatattccaaggtttaaaaagtcaaattacatctcaagt 440
Query: 241 ttgacatgttctgagttcacttataatccttttccactatgttagccaacctgttatgga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgacatgttctgagttcacttataatccttttccactatgttagccaacctgttatgga 500
Query: 301 aataattgcataaagaatctatttgtgttttggagtttccaagtacccattcagtgtgac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aataattgcataaagaatctatttgtgttttggagtttccaagtacccattcagtgtgac 560
Query: 361 agttgatgtctagtatcttctaaaagtgtcctttctaaaagtgaagttggtacctaaaca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agttgatgtctagtatcttctaaaagtgtcctttctaaaagtgaagttggtacctaaaca 620
Query: 421 tttgctatgactaagaagaagagaccatatatttctggaatataacttatagtagcagct 480
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 621 tttgctatgactaagaagaagagaccatatatttctggaatataatttatagtagcagct 680
Query: 481 taaaaaataatttcacacctttcaacttgacattgcattctccaactgaaa 531
||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 681 taaaaaataatttcacacctttcaacttgacat-gcattctccaactgaaa 730
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 930
Length adjustment: 10
Effective length of query: 521
Effective length of database: 920
Effective search space: 479320
Effective search space used: 479320
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
