BAC Information

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BAC

Clone NameMSMg01-106J15
Chromosome8 (Build37)
Map Location 48,567,243 - 48,724,089
singlet/doubletdoublet
Overlap geneD030016E14Rik, Rwdd4a, LOC384819, LOC667422
Upstream geneAcsl1, Mlf1ip, Ccdc111, Casp3, Irf2, Enpp6, Stox2, 4930448N21Rik
Downstream geneIng2, LOC546058, Cdkn2aip, LOC100039801, Cldn22, Wwc2, LOC100040113, Dctd, Odz3
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-106J15.T7 (MSMg01no106_j15.b1)MSMg01-106J15.TJ (MSMg01no106_j15.g1)
ACCAG320640AG320641
length1,3671,367
length of high quality
(start - end)
314 (91 - 404)277 (134 - 410)
definitionCHROMAT_FILE: MSMg01no106_j15.b1 PHD_FILE: MSMg01no106_j15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:07:17 2005CHROMAT_FILE: MSMg01no106_j15.g1 PHD_FILE: MSMg01no106_j15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:07:17 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,567,243 - 48,567,556)(48,723,813 - 48,724,089)
sequence
CCCCCTTTNNTATCAATGGGCGCTAACACTCCTAAGGGAGAGGATCCGCG
GAATTCCAGAGAAGACCCTGACCCTTTAAGAGTTCTGGNGACCACGAAGG
ACCTCAAGATTACCCCCTGATATACTGTGCTGTAGTTACAGAAATTTGGG
GGCCCTTCCTTAGTCACCAGGGTGGAGGAGGCCAGGTGTGTTCACTAGTA
TCTCATAGCAGCCAGGAGGGAGACACAGAAGGGATGTAGTTCCAATAGCC
ACACCGATGGCACTGCCACAAGGGCCGACCCGACCTCTTAGGGGGTCAAA
CATTTCAGAGGACTTTCTAAATCTAAATCACAGCCACCTCTTAAGGCAGC
TTGGCAAAACCCCTGTAAGACATTTTGCAGCATTGCCTCACAAATGCAAG
AGTCTCTGATGCTTGCGGCAGCGTGTGAAAGGCGCATTCAAGTAGGTTGC
CATACCAACTTGGAAGTGGAAGCAGTGCCCGCAGGTTCCTGATGGATGGA
TGGCTTTCCCATGGGGTCCAGGACATGCCCTAGGGATGCTATTTCACCCC
ACCTCCTTCTGGTGTCCCTCACTCTCACCGAGTTCAGGCTTGGGCAGCAG
GTACCCATTCACCTGGCCTCTTCAGTTTCTGCAGCCACCTCCTGGCCCCC
AGCATGCAAGAGTACTAGAAAAACCTTCATGGTCTGTCACAGCGGGGTCC
CACTTTTACACCAAAAAGTTCATTGTTCTAAACTCACCCAGCCTGTCTGA
CCACTTTTTGAAATTTCATTATGCACCCATTTGAACTTTGTAACTCGGTC
ACTCCACACCCACCCTGTATTCCTGCATAGGTGAGACTCCACTGTTTTAT
TATTTTGGGCATGGGAACCGTGAACAGAATCAAACCTTCTTGTGGGGTAA
AAACACTTCTAGTTTTAATTTTTCAATGGATTGGAATGGTAATTCAAATG
GGGTAATAGGAAACTATCATTTTTTTACCTGGAAGAACTTGATTCCCCCC
CAAAAATTAAAACTTGTCATGCTCTGTTGTGATTTTTTCTTGTTTGCTTT
TTCTTTGTTGTTATAATGTTTCCCTTCCTTTGAATAAATGTAACATTAAT
TGGTTTTTTTATTGTTGTCAACTCTCTCCTCCCTATGTCCAATATTCCTG
GATCCCCGATTTTTCTTTATATTATTTCCTATATAACCTATCTCCGTGGC
CTATATTTTGGTTCCCCTCGGGTGGTGTCAAATATTAATACAAGATTCTT
GTNCTCCTTGTGGGCCTCTCCTTNGTTATATCTCTTCTCTCCCTCACTGC
CTGTGTATGTTATATAATATCAACAGATTATGTACGTCCTGATTTCTCTT
CTTCTTTAGTTACTTGG
CCGTCCTTTTNTAATCACTGGAGGCTGGGGCGCCGGTXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCCCTTTAGGGGGCGTACAAAGCAAG
TTCAATGGCTAAAAACTCCCCTTGGAGAACACTCAGACATCAGGCATCTA
TAGCCAAGCCCAGGTTGGTTAACATTAGCTAAGTAGTTATTGTCCGGTTT
GGGTCTTCCCATGATTCCTTGCTTCCATCAATAAGAGATACCGACACACT
CAGAACACCAGCTCCTTATGTTCTTCTAGCTGGGCTGCCTTGTCTGGCCT
CAGTGGGAGAGGAAGCACCTAGCCTCAAAGAGACATGAAGTACCAGGGTT
GGGGGATGCCAAGGGGGCCCCCGCCCGCTCTGAGGAGAAGAGGAGGGCTG
GAGGAGGGAAGGATTGTAGGAGGGAGTGACCAGGAGCGGGGAACAAAAAA
GGAAGATCAGTTTCTCTGCATACATTTCTAAGACTAGCCCTTTCTACTTT
GCTTAGAAAGATATTCTTGGGACAACTTTTTGTTTCCTCTTGCCTTCTCT
CTCCATGTATATCCAATTAATTTCGTCAATCTCTTCCTTTTCTTTCTTTC
TTTCTTGATCTCCTCCCTCCCTTCCTTCCATGCTCTCTTCCCTTTTTTTA
GACAGTGTCTCACCATGCATACCCGACTGGTCTGTATCTCTCTATGCTCT
TCTGGCTTTTCCTTCTGATTGTTGTGTCTGTACTCTTTCCCGCTTTTCTT
TTTTCTTATTGTCTTTGTCATATAATTGTTCTCTGTCCTCGTATGTCTCC
CTAACTACCAATCTGAAATGTTCTGGCTCTCTTACCTTGTGTCATCCTTG
TTTCTGTTGTCTTGATTTAATCTTCTGTCTTTTTTTTACTTTATTTACAT
TTTATTTTCTCTTATATCGTTTTTATCTATTCTCTCTTTTTTATCTTCTG
TATTGTTTATTACCTGTAACTGCTAATCTACCCTTAGATACTTTTCTTTT
TTGTCTCCATAAGTCTTTTTTGTTCTCTCTCTATTGTTATTCTATATTCC
CCTAATTTTATTCTATTGACTTTCTGGTTCCTATTATAATTAACATCCTT
GCTTCTCCTCTCTTTTATACTTTGGTTACATATTGTTTTCACTTTCCTTT
CTTTTATATGANTTATTTTATTTTCCTTTACTCTCTTTCATACTGTGGTC
ATAATTTGTATTCATTCTCTTCATTATACAATGCTGTTATTTTTTTGTTC
TCTCTCTACTTCTTCATTTGTATATATCTAGCTCTCTTTCTATACATCTT
ATCTCTTCATCTTCCTGTACAATCNTCTTCTATTCTCACTTCTCATCTCT
TTCTTCCTCTGTCATCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no106_j15.b1 MSMg01no106_j15.b1 CHROMAT_FILE:
MSMg01no106_j15.b1 PHD_FILE: MSMg01no106_j15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:07:17 2005
         (314 letters)



>mm_chr8_48567043_48567756
          Length = 714

 Score =  576 bits (298), Expect = e-169
 Identities = 310/314 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   accacgaaggacctcaagattaccccctgatatactgtgctgtagttacagaaatttggg 60
           ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 201 accacgaaggacctcaagattacacactgatatactgtgctgtagttacagaaatttggg 260

                                                                       
Query: 61  ggcccttccttagtcaccagggtggaggaggccaggtgtgttcactagtatctcatagca 120
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 261 ggcccttccttagtcaccagggtggaggaggccaggtgtgttcactagcatctcatagca 320

                                                                       
Query: 121 gccaggagggagacacagaagggatgtagttccaatagccacaccgatggcactgccaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gccaggagggagacacagaagggatgtagttccaatagccacaccgatggcactgccaca 380

                                                                       
Query: 181 agggccgacccgacctcttagggggtcaaacatttcagaggactttctaaatctaaatca 240
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 381 agggccgacccgacctcttagggggtcaagcatttcagaggactttctaaatctaaatca 440

                                                                       
Query: 241 cagccacctcttaaggcagcttggcaaaacccctgtaagacattttgcagcattgcctca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagccacctcttaaggcagcttggcaaaacccctgtaagacattttgcagcattgcctca 500

                         
Query: 301 caaatgcaagagtc 314
           ||||||||||||||
Sbjct: 501 caaatgcaagagtc 514


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no106_j15.g1 MSMg01no106_j15.g1 CHROMAT_FILE:
MSMg01no106_j15.g1 PHD_FILE: MSMg01no106_j15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:07:17 2005
         (277 letters)



>mm_chr8_48723757_48724433
          Length = 677

 Score =  520 bits (269), Expect = e-152
 Identities = 275/277 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagacatcaggcatctatagccaagcccaggttggttaacattagctaagtagttattgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 cagacatcaggcatctatagccaagcccaggttggttaacattagctaagtagttattgt 274

                                                                       
Query: 61  ccggtttgggtcttcccatgattccttgcttccatcaataagagataccgacacactcag 120
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 taggtttgggtcttcccatgattccttgcttccatcaataagagataccgacacactcag 214

                                                                       
Query: 121 aacaccagctccttatgttcttctagctgggctgccttgtctggcctcagtgggagagga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 aacaccagctccttatgttcttctagctgggctgccttgtctggcctcagtgggagagga 154

                                                                       
Query: 181 agcacctagcctcaaagagacatgaagtaccagggttgggggatgccaagggggcccccg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153 agcacctagcctcaaagagacatgaagtaccagggttgggggatgccaagggggcccccg 94

                                                
Query: 241 cccgctctgaggagaagaggagggctggaggagggaa 277
           |||||||||||||||||||||||||||||||||||||
Sbjct: 93  cccgctctgaggagaagaggagggctggaggagggaa 57


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 677
Length adjustment: 9
Effective length of query: 268
Effective length of database: 668
Effective search space:   179024
Effective search space used:   179024
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)