BAC Information

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BAC

Clone NameMSMg01-107C23
Chromosome8 (Build37)
Map Location 85,847,822 - 85,848,150
singlet/doubletsinglet
Overlap geneElmod2
Upstream geneIl15, EG666564, LOC675800, EG666289, Zfp330, Rnf150, LOC100039688, Tbc1d9, Ucp1
Downstream gene4933434I20Rik, Clgn, Scoc, LOC546077, LOC675854, Olfr370, Ndufb7, Gpsn2, Dnajb1, Gipc1, Ptger1, Pkn1, Ddx39, Cd97, EG384857, Lphn1, Asf1b, Prkaca, Samd1, 1700067K01Rik, 2210011C24Rik, 4432412L15Rik, Il27ra, Rln3, C330011M18Rik, Rfx1, BC057552, LOC100039920, Podnl1, Cc2d1a, 4930432K21Rik, Nanos3, Zswim4, D8Ertd738e, 2410018C20Rik, Ccdc130
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-107C23.T7 (MSMg01no107_c23.b1)MSMg01-107C23.TJ (MSMg01no107_c23.g1)
ACCAG321065AG321066
length1,2171,297
length of high quality
(start - end)
334 (132 - 465)329 (129 - 457)
definitionCHROMAT_FILE: MSMg01no107_c23.b1 PHD_FILE: MSMg01no107_c23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:08:42 2005CHROMAT_FILE: MSMg01no107_c23.g1 PHD_FILE: MSMg01no107_c23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:08:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCGAATCTNNNNNNTCGCATTTGGCGCTATAGACTCCTATAGGGAGAGGA
TCCGCGGAATTCTCACCTGAGGAATACCCCCTTAAAGAGAAGCACCTGAA
AAAATGTTCAACATCCTTACCCTTCAGGGAAATGCAAATCAAAACAACCC
TGAGATTCCATCTCACACCTGTCAGAATGGCTAAGATCAAAAATTCAGGT
GACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCTTCCATTG
TTGGTGGGATTTCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGT
TCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCCGCAATATCTCTT
CTAGGCATATATCCAGAAGATGTTCCAACCGGTAATAAGGACACATGCTC
CACTATGTTCATATTTTCCTTATTTATAATAGCCAGAATCTAGAAAGAAC
CCAGTTGCCCCTCAACATAGGAATTGATACAGAAATTGTGGTACATTTAC
ACAATTGAGTACTACTTAGCCATTAAAAAGAATGAATTTATGAAATTCCT
AGGCAAATGATTGGACCTGGAGGGCATCATGCTGAGTGAGGTAACCCAAT
CACAAAGGAACTCACACAATATGTACTCATGGATAAGTAGATATTAGCCC
AGAAACTTAGGATACCCAAGATATAAGATACAATTTGCTAAACTCATGAT
ATTGAAGAAGAATGAAAACCAAAGTGTGGACACTTTGCCCCTTCTTAGAA
TTGGGAACAAAACACCCTTGGAAGGAGTTACCGAGACAAAGTTTGGAGCT
GTGACGAAAGGATGGACCATCTAGAGACTGCCGCATCCAGGGATCCCTCC
CATAATCAGCTTCCAAACACTGTAACCCTTTGCATACCCTATCAATATTT
TGCTTGAAAGGGACCCATATATACCCTGTTCCCCTTGTGAGTCTAATGCC
GGGGTCCCTAATTAAACACTAAAACGGTATTGTTTTACTGCCCAATTTAT
TGTAAGTGATTCCCAGTGTCCCCCCTAATGTAAGGAAGCTTATACAAAAG
TTACCCCCAAGGTAACCTAAAAGGGCATTTGGTAATCCCCTATTAGTTGG
GAAACATACATTTTTATGGAAATTATTTTCATAATTACTCCCGCGAATTT
TCTCTGAATCCCTTAGGGTGTCCTTTAGTGTCCTCCACAAAAAAGTTCCC
TCTATATACCTCTTCCC
NCCAGATTTNNNNAAACATGGTAGGCTGGGGCGCCXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCCTTTTAAGTCCAAACACTGAGTCT
TTTAATTGATAAATATCCTTTTAAGTTTTCTTTTCAAAACTTTCTCCACA
GGTTTAGAACTGAAAACTGTCTCACTAGAACTCTCTGGATGGTTTGCATC
TGTCTGCTGCGGTAGCTGGCACTCCACTTTGATGATCCAAAAGTGCACTG
CTAATACAGACAGAAGTGAGCAACCTGCTGCCAAATATTTCAGTCCACTT
ATTAATACATAGCAGTGGCCTCCAGGGACCCAGCACTGTCTACATCCTCA
GACTACATCTCTGTTAATACATGTAGCTCTTTCTGGCCAACTATGTCTCA
GGTTTTGTTTTTGTTTTGTTTTTCCTTGCTGACTGTGGTCCCCAAGATTT
CAGTAAAATGTTTAATCCCCCCCCAGAAACTAATCATATCTGTCATGCTT
CCAACTACAAGTGACTAAACCTTCAAAGTTTAATGTCTTCTGTGATGTCA
GCTAGATTGTCCGCTGGCGACCTTTAATGGATTGTGGGATAGATTTTAAT
CATGAGCCGATTTTTCAGTACCTGTCGACTCTGTTACCGTGTTAATAGAT
GAAGTCCCTGAACTTAAACTTTAATCCTATCGGTGTCCTTTTATGTGCTT
CTATGATCACTCATCTTCATGTTCTGTAAGAACTTCTTGCTTCTCGTTCA
TAAATGACACCCGAATTGTTATTTTTTATTTTTAGCGTCTTTGTTTTTTA
CTGTGCCACTCCAAAAGTTGATTTTGTCCCTTCTCCTCCATTTTCCCCTA
GATATTTTCCCGTTTAAACATTCGCCTACTGTTTTCTTTCTTCCTTTAAA
TTGTTTTGTTAAACAAAATTAATTTAATTCTTTAAATTATGTTTTCTTCA
TTTGATTTATATAAAATATTTTACTTTTCTTGCCATAAAGTTTCTGTGTT
TCTTTGTTCTCCTTTAGTTTTCCTTATCTCTTAAAATGTGTTCTATTAAA
TTCTTCCTGATATCAATCTTCTTCTCTCCCTAGAGACAATTTTTTAATAG
TCCCCCTTTTGTTTTATTACTCTTCCTGTGGCTTCCTCNATACGTGTATC
TTTTTCTTCCTCTTTCTTCCTATCATCCTCTTCGTGGAATCTCTTTATCT
TCGATATTACGCCTTAATAATATTATTACTATGTGGCATCTTCTTCATAT
CCTTTCTTTTATCTATCTATCATGTCTTATTATCTTCCATCTATTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no107_c23.g1 MSMg01no107_c23.g1 CHROMAT_FILE:
MSMg01no107_c23.g1 PHD_FILE: MSMg01no107_c23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:08:42 2005
         (329 letters)



>mm_chr8_85847622_85848350
          Length = 729

 Score =  636 bits (329), Expect = 0.0
 Identities = 329/329 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcttttcaaaactttctccacaggtttagaactgaaaactgtctcactagaactctctgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcttttcaaaactttctccacaggtttagaactgaaaactgtctcactagaactctctgg 260

                                                                       
Query: 61  atggtttgcatctgtctgctgcggtagctggcactccactttgatgatccaaaagtgcac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atggtttgcatctgtctgctgcggtagctggcactccactttgatgatccaaaagtgcac 320

                                                                       
Query: 121 tgctaatacagacagaagtgagcaacctgctgccaaatatttcagtccacttattaatac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgctaatacagacagaagtgagcaacctgctgccaaatatttcagtccacttattaatac 380

                                                                       
Query: 181 atagcagtggcctccagggacccagcactgtctacatcctcagactacatctctgttaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atagcagtggcctccagggacccagcactgtctacatcctcagactacatctctgttaat 440

                                                                       
Query: 241 acatgtagctctttctggccaactatgtctcaggttttgtttttgttttgtttttccttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acatgtagctctttctggccaactatgtctcaggttttgtttttgttttgtttttccttg 500

                                        
Query: 301 ctgactgtggtccccaagatttcagtaaa 329
           |||||||||||||||||||||||||||||
Sbjct: 501 ctgactgtggtccccaagatttcagtaaa 529


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 729
Length adjustment: 9
Effective length of query: 320
Effective length of database: 720
Effective search space:   230400
Effective search space used:   230400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)