BAC Information

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BAC

Clone NameMSMg01-109B06
Chromosome8 (Build37)
Map Location 78,914,988 - 78,915,516
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666211, LOC100039229, 1700007B14Rik, LOC666036, LOC100039185, EG631594
Downstream geneLOC666226, LOC100039211, LOC384847, Nr3c2, Arhgap10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-109B06.T7 (MSMg01no109_b06.b1)MSMg01-109B06.TJ (MSMg01no109_b06.g1)
ACCAG322351AG322352
length746721
length of high quality
(start - end)
83 (139 - 221)531 (88 - 618)
definitionCHROMAT_FILE: MSMg01no109_b06.b1 PHD_FILE: MSMg01no109_b06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:12:09 2005CHROMAT_FILE: MSMg01no109_b06.g1 PHD_FILE: MSMg01no109_b06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:12:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTACACNNAAGTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCGCGGAATTCTGTGAGATTTTCGAAATCAGATGGACAGATTAG
AATTCTGTGAGATAACTGAATGTCAGATGAACAGATTATAATCCAGCTTT
CCAGAAAACAGCCCAGTATTTTTTCCTTAAAACTCAGCCATTTTGCTAGT
CACAGGACCATTTAATTTTTAGTTGCCTATTGATGAACCCGTGTTATTCC
AGTAGAAACTGCGCTGGATGACTACTCGTAATACAGCCTATAAATATCTT
AACAACCACAAATCCTGCCCACGTTTCCCCTCCTGACATTAATATTACTT
TCACACTCACTTTTACATAACGCATGTTATCTAATATCACCCCCCCACCT
ATTCCTTACCCCCCCGCATACCCGTTTTGCTTGTATTTACAACCACCCCC
TACCTCCTTCCCCCTGGCGATCTTTCCCAGTTTGCTCCTCTTTTCCCCTT
TTACCGCACTTTGCGCTATTCTTTCTTTTTATTCCTGCCAACCCGCCCTT
TTCGCTCTTGATCTTTTCCCATTCCGCCCGTTGTTCCCTTTCCCCTCCCT
CCCCCTTTTCCCCTTCCTCCCCCTATCCCCCTCCTTTTCCCTTCCCCCTC
CCCCCTCTTCCCTTTCCCACTTTCTGTTTTCGCCTTCTCCCTACCCATTT
CCCCACCCCCCCCCTTCCCCTTTTCCCCCCCTCCTTTCCATCCCCC
AAGTTACGNNNNCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGGATACATAGT
TCATGTGCATGAAAGATCAGATATATCTTTTTATATAAGTACACAAAGAA
ATAAAACCTATTAGCCAATCTGACTATTCCTGACTTGTTATATATAGTGA
AGAAGAAGGGAACTGCATACCACATGCGTAGATAACCAATTCGAAATAAC
TACCTTGGGACCTGAGTGGGTCTTTTTATTTTGATAGAAGCAAAGATAAA
TAATTTTCATAATTTTAAGTGGTATTCATAGAGCCAGCATCTTCTCCTCT
ATTCCTCTAAGGATTAGACAACTCTTAGCAGAGAGATGTTGCTCAGAAAG
GGGCACTTCCTGCGTTTCTCATCAGATAGGCATAAGTGTGTCCTATAAGA
ACTTATCCTGGGCTCTGCTGTGTGAGTTATTAAAACCCAGTCTAGGATCA
CTAGTGATCAAATGTGATTGGGAAAGATATCCTAACCAGGAGCCCACGTG
GTGCACTCTGCTCCATTCTAAGGACAGGGATGGCATACTTTGGCTTCAGG
TATATTTCTATGCCTCTTAGGACTTTGGAAGGAATGATTGGGTGCCTCTG
TCCTGTACTTTTTGGAAGATGATTGCTGTTTCCAGACAAAAGAATTAAGT
ATATCATGACAAAACTTCAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no109_b06.g1 MSMg01no109_b06.g1 CHROMAT_FILE:
MSMg01no109_b06.g1 PHD_FILE: MSMg01no109_b06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:12:09 2005
         (531 letters)



>mm_chr8_78914788_78915716
          Length = 929

 Score =  949 bits (491), Expect = 0.0
 Identities = 521/531 (98%), Gaps = 2/531 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggatacatagttcatgtgcatgaaagatcagatatatctttttatataagtacacaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atggatacatagttcatgtgcatgaaagatcagatatatctttttatataagtacacaaa 260

                                                                       
Query: 61  gaaataaaacctattagccaatctgactattcctgacttgttatatatagtgaagaagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaataaaacctattagccaatctgactattcctgacttgttatatatagtgaagaagaa 320

                                                                       
Query: 121 gggaactgcataccacatgcgtagataaccaattcgaaataactaccttgggacctgagt 180
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gggaactgcataccacatgcatagataaccaattcgaaataactaccttgggacctgagt 380

                                                                       
Query: 181 gggtctttttattttgatagaagcaaagataaataattttcataattttaagtggtattc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggtctttttattttgatagaagcaaagataaataattttcataattttaagtggtattc 440

                                                                       
Query: 241 atagagccagcatcttctcctctattcctctaaggattagacaactcttagcagagagat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atagagccagcatcttctcctctattcctctaaggattagacaactcttagcagagagat 500

                                                                       
Query: 301 gttgctcagaaaggggcacttcctgcgtttctcatcagataggcataagtgtgtcctata 360
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gttgctcagaaagggtcacttcctgcgtttctcatcagataggcataagtgtgtcctata 560

                                                                       
Query: 361 agaacttatcctgggctctgctgtgtgagttattaaaacccagtctaggatcactagtga 420
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agaacttatcctggcctctgctgtgtgagttattaaaacccagtctaggatcactagtga 620

                                                                       
Query: 421 tcaaatgtgattgggaaagatatcctaaccaggagcccacgtggtgcactctgctccatt 480
           |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct: 621 tcaaatgtgattgggaaagatatcctaaccaggagcccac-tg-tgcactctgctccatt 678

                                                              
Query: 481 ctaaggacagggatggcatactttggcttcaggtatatttctatgcctctt 531
           |||||||||| ||   |||||||||||||||| ||||||||||||||||||
Sbjct: 679 ctaaggacagtgacaccatactttggcttcagttatatttctatgcctctt 729


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 929
Length adjustment: 10
Effective length of query: 521
Effective length of database: 919
Effective search space:   478799
Effective search space used:   478799
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)