BAC Information

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BAC

Clone NameMSMg01-109B09
Chromosome8 (Build37)
Map Location 89,945,172 - 89,945,333
singlet/doubletsinglet
Overlap genenone
Upstream geneAbcc12, Lonp2, Siah1a, ENSMUSG00000074178, BC004022, LOC666960, EG625298, EG330819
Downstream geneCbln1, LOC100040294, 4933402J07Rik, Zfp423, LOC100040328, 5033428A16Rik, Heatr3, Papd5, Adcy7, Brd7, LOC100040369
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-109B09.T7 (MSMg01no109_b09.b1)MSMg01-109B09.TJ (MSMg01no109_b09.g1)
ACCAG322357AG322358
length751760
length of high quality
(start - end)
160 (69 - 228)60 (93 - 152)
definitionCHROMAT_FILE: MSMg01no109_b09.b1 PHD_FILE: MSMg01no109_b09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:12:10 2005CHROMAT_FILE: MSMg01no109_b09.g1 PHD_FILE: MSMg01no109_b09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:12:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCAAAATTTGCGGCGCTATACGACTCCTATTTCTAGAGGATCCGCGGAAT
TCTTGCTGCCTGCCCATCCAGCATCGAGCATGCTGGAGGTGTGGGTGGTC
AGGCAAGCCTCCGAGAGAAGGGGTGAGATCTGAATCATTCTCAGGAGCCA
ATCAGGCAGGTGTCGTAGGGGAAAGGTAGCAAATGATATTAGGACATTGA
GGCAGGAGGGGGGGGCTCAGCTTGAGCAAGAAGCAGGTTCTGTGAGGCTG
CACATGGTAAATTAAAGGAGCCATGCAGGACTTTATGACTGCATGTGTCC
CCCACCCTGACACTTGGAGGTTGGAATCCAAGCCCTGACATGGTGTGCTG
CTGTCAGCAGGTGGTTTCTTTAGGAGCCGATAAGGCCTTGACGGCGCCCT
CGTATTGGACTACCCGCCCAGTCCCGTCTTCCTCTTCTATTAAGTCATTA
TGTTTACCGTGACCTTTTCTTACTGACCTAGTCCTTCTATATATTATTCT
TAGACCCCTCAGGCTCTAGAACCAATTGTAAGCAACGCATCTCTTACTCG
CACCACCCTACTCTTAGCTCTCCCCGTCACACCTCTCTACCCTACCCTCC
GCTACAACCTCCCCTATCATAGGTCCGATTATCGCCCTCCTCTCTCACCC
AAATCAAGACAATACCTCCGTCTCACTTCGATCCCTACCCCACTCATAAC
CATCTATGAATACCCCTCCCTCTCCTCCACTTTATGACCCTTTATCATAA
A
ATGATAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTCCACAACAGAGAAAATTACCACC
ACACACCCAATCTATGGTATTTGACTACAAATCTTGAACTAAGATAGGTT
TTCGGCACCAAGAAAGCTCTAGCCTATAATGGGAGGAGTTGAGCACCAAG
GGGATATAGAGAGTATATTTAGTGAGTGATATACCTGAGCACCATGGGGA
TAAATAGAGTTGTATTTAGTGAGTAATATACCAAGGTATTCTGGATTTTC
ACCTCATGTTTTCCAAGGCATATATTTCAATCACCTCTAGACCACGGCTC
TCTCATAATTAACTATGTTGCTCGATCCTCTGTACTCTTCTGAGTTTTGG
CTGTAACTTTTAATCCACATTGCTCATCCTAAGAATACTTTTGGTTTTCA
CTTCAGCTTTCACCTGTATTATTAATCCTCCCTCAGCTCACTCGTTGTCT
TTTCCCTCTGCGCACTATTGCTCGCCGTGTCCTTCTGATTCCCCCGTTCC
CTTGTATTTACTTCATCCCTCACTTTTTCACGATGTGTCCCAGCAGAATT
CTCGCACCCCCCTTTATATTATTATGTATCCCCTCAATCTCATGTCTCTT
ATCTGTCCGTAAGTTAAATATTTTATATCTTCTTTCCTCTTCTTCTGATA
TTTTTTTATTTTTACTATTAGCTTTCCCTTCCTTGTTACCGTTCGTTTGT
TATTTCCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no109_b09.b1 MSMg01no109_b09.b1 CHROMAT_FILE:
MSMg01no109_b09.b1 PHD_FILE: MSMg01no109_b09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:12:10 2005
         (160 letters)



>mm_chr8_89944972_89945533
          Length = 562

 Score =  294 bits (152), Expect = 2e-84
 Identities = 159/162 (98%), Gaps = 2/162 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagcatcgagcatgctggaggtgtgggtggtcaggcaagcctccgagagaaggggtgaga 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 362 cagcatcgagcatgctggaggtgtgggtggtcaggcaagcctctgagagaaggggtgaga 303

                                                                       
Query: 61  tctgaatcattctcaggagccaatcaggcaggtgtcgtaggggaaaggtagcaaatgata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 tctgaatcattctcaggagccaatcaggcaggtgtcgtaggggaaaggtagcaaatgata 243

                                                     
Query: 121 ttaggacattgaggcagga--ggggggggctcagcttgagca 160
           |||||||||||||||||||  |||||||||||||||||||||
Sbjct: 242 ttaggacattgaggcaggaggggggggggctcagcttgagca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 160
Length of database: 562
Length adjustment: 8
Effective length of query: 152
Effective length of database: 554
Effective search space:    84208
Effective search space used:    84208
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)