BAC Information

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BAC

Clone NameMSMg01-109L22
Chromosome8 (Build37)
Map Location 72,793,216 - 72,793,563
singlet/doubletsinglet
Overlap genenone
Upstream geneD130040H23Rik, LOC665561, LOC670593, EG665578, LOC622336, LOC100041482, LOC673968, AI449175, EG636741, 1200003I07Rik, D330038O06Rik, Atp13a1, Gmip, Edg4, Pbx4, Cilp2, BC028663, Ndufa13, Tssk6, Gatad2a, LOC665649, 9130404D08Rik, Sf4, Tm6sf2, Hapln4, Ncan, Rfxank, 2310073E15Rik, 2310045N01Rik, Mef2b, Tmem161a, Slc25a42, Armc6, Sfrs14
Downstream geneHomer3, Ddx49, Cope, Lass1, Upf1, Comp, Crtc1, Klhl26, Tmem59l, Crlf1, 2810428I15Rik, Uba52, Fkbp8, Ell, Isyna1, Ssbp4, Lrrc25, Gdf15, Pgpep1, Lsm4, Jund1, 2410018E23Rik, LOC100041434, Pde4c, Rab3a, BC051227, Ifi30, Pik3r2, LOC100041971, Mast3, Il12rb1, Arrdc2, Kcnn1, LOC100042011, Ccdc124, Slc5a5, Rpl18a, Snora68, Mtap1s, LOC100042057, LOC665858, LOC384645, LOC100041583, EG621377, 2410004L22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-109L22.T7 (MSMg01no109_l22.b1)MSMg01-109L22.TJ (MSMg01no109_l22.g1)
ACCAG322852AG322853
length793733
length of high quality
(start - end)
---347 (74 - 420)
definitionCHROMAT_FILE: MSMg01no109_l22.b1 PHD_FILE: MSMg01no109_l22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:13:04 2005CHROMAT_FILE: MSMg01no109_l22.g1 PHD_FILE: MSMg01no109_l22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:13:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTCGATCTGAATCGCGGCGCTATACGACTACTATAGTCAGGACTGCGC
GGAGTTCTCCNGAAAATTTCACAAAAGGGGAGAGTTGTGGACTCNCAAGT
GCCTCCTGCAGCTGAGGCAAGAGCACACACCAGTCTAACGGGTGACTGAC
ATCAGTCAGGCACGGGGCTGGGGATCAAGACCATGTCGCTGGAGCCCCAG
TCACCGTTGTTCCCCCACCGGTCCCCGCGTTAAAAGTTACCCGATCTGAA
CGTATGAATTGAGCCGAGCTTTTTGCCCATGATTGTCCCGTCGTTTACTG
CTACCTTACGACAGCCTTGCGCTCTCCCCTGTTTTCTTTTCCTTACAATT
ATATATATTTTTTTCCCCCATTTTTTTTTTTTTCCCCCCTCCCCTCCTAA
TTTATATGCTTGTAATCCCTAGCGCGCCCCTCGACTACCTATTATTAAAA
AATTATCCGCCGCGCGGGTTTTCGTCCTTCCTCCCTTAACATTTATTCCG
CGTTTTTCCCCCATCTTTACTCCTTTTTCCCATTCTTTCCCCTTTTCTTT
GATTTTTTATAACACAAACCCCTTTCCATACCCTATGATTACCTTTCCCC
ATACCCCCATATTTTCCCTTTCCACACCTCCCCCCCATTTACCCATTACT
TCCCCTTAATTCCCCTTTCCTTTCCCCTTCCCCTGTCCCGCCCATTTCCT
TATCCGACATTTCCTGTTATTCCGCTTCTCTCTACACAATATCCCTTGCC
CCCGCCTTTCCCCCTATTCCCCCATCTCTCTTTCCATTACCCC
TATATTTATCATGATGTGGTAGGCTGGCGGCGCCTGGCTTCAACAAAAGG
TGACCTATAGAAGGTTCCCGGATTCCTTCCCACCACACCTGAGAGTTTTA
AAAGATATATTTGTGTCTTTGTGTGGGAGTGAGTACAATGCCCAAGGAGG
TCAGAAGAGGGCGCTCCATCCCCCCAAGGAGGCCAGGAGAGGGTACCACA
TCCCCTGGAGCTCGAGTGACAAGTGCCTATGAGTTCCGATATGATCCTCC
ACTAGAGTCTCCAATCCCAGAAAAAGTGAGAAACATTTGACCATGAATTG
TTCCCCCACAGATTTGCAGGTTGAACACTTGTTCCTCAGTGGATGTGTTC
TCGAAGGGTTCTGGAAATGAGAGTTGGGGCATCTCCTGAATGGGACCACA
GAGGGCCTTCAGGAATAGAAGCGGATGGAGCAAGAGCTTTGTGGTCTTGG
TGCGGAGGGGGTGGGGGGGGCAGGTCTTGAGCATATGACAGAAGCCCAAC
CTGAGTGTGCCCATAAGGAGGGGTCATGTCCTCTGGAGGTAAGTGCTAAG
CGGCTTGGGTACTGAGAGCCACGCTCTGGTCCTCCACAAGAGCATTACGT
GGCCGAAGCCTCTGCGAACTTCCAGAGCCTATGCGGCACTTTGCCGTGCG
TGCGCGTGCTCCGAAGACTCCTATCCCTTGTTGGCTCACACCTCTTACCC
TTCTTTTTTTGGAGGCCTGTTCTTATTTTTGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no109_l22.g1 MSMg01no109_l22.g1 CHROMAT_FILE:
MSMg01no109_l22.g1 PHD_FILE: MSMg01no109_l22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:13:05 2005
         (347 letters)



>mm_chr8_72793017_72793763
          Length = 747

 Score =  665 bits (344), Expect = 0.0
 Identities = 347/348 (99%), Gaps = 1/348 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccttcccaccacacctgagagtttt-aaaagatatatttgtgtctttgtgtgggagtga 59
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 200 tccttcccaccacacctgagagtttttaaaagatatatttgtgtctttgtgtgggagtga 259

                                                                       
Query: 60  gtacaatgcccaaggaggtcagaagagggcgctccatccccccaaggaggccaggagagg 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gtacaatgcccaaggaggtcagaagagggcgctccatccccccaaggaggccaggagagg 319

                                                                       
Query: 120 gtaccacatcccctggagctcgagtgacaagtgcctatgagttccgatatgatcctccac 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gtaccacatcccctggagctcgagtgacaagtgcctatgagttccgatatgatcctccac 379

                                                                       
Query: 180 tagagtctccaatcccagaaaaagtgagaaacatttgaccatgaattgttcccccacaga 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tagagtctccaatcccagaaaaagtgagaaacatttgaccatgaattgttcccccacaga 439

                                                                       
Query: 240 tttgcaggttgaacacttgttcctcagtggatgtgttctcgaagggttctggaaatgaga 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tttgcaggttgaacacttgttcctcagtggatgtgttctcgaagggttctggaaatgaga 499

                                                           
Query: 300 gttggggcatctcctgaatgggaccacagagggccttcaggaatagaa 347
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gttggggcatctcctgaatgggaccacagagggccttcaggaatagaa 547


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 347
Length of database: 747
Length adjustment: 9
Effective length of query: 338
Effective length of database: 738
Effective search space:   249444
Effective search space used:   249444
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)