BAC Information

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BAC

Clone NameMSMg01-110A24
Chromosome8 (Build37)
Map Location 63,026,269 - 63,026,622
singlet/doubletsinglet
Overlap genenone
Upstream geneAadat
Downstream geneMfap3l, LOC100040679, 2700029M09Rik, Clcn3, B230317F23Rik, Nek1, Sh3rf1, EG664975, Cbr4, Palld
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-110A24.T7 (MSMg01no110_a24.b1)MSMg01-110A24.TJ (MSMg01no110_a24.g1)
ACCAG323085AG323086
length738699
length of high quality
(start - end)
367 (59 - 425)218 (85 - 302)
definitionCHROMAT_FILE: MSMg01no110_a24.b1 PHD_FILE: MSMg01no110_a24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:13:30 2005CHROMAT_FILE: MSMg01no110_a24.g1 PHD_FILE: MSMg01no110_a24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:13:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACTCGGCCNNAGATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXCGCGGAATTCTCTCCATTTTGCTGTTGTTGTTGTTGTTGTTG
TTGTTGTGGATTTATGAGAGCCTATAACAAAACCTAACTTTGCAACCTAG
GCAAGCTAGGGCAGAGCAAGAAAACAGAATTTGTTTCTCAATTCTTTCCT
GGCCTTGTGAGCTCAACAAGGTGGTATTTGCAATGCACTAATCTATTTAA
AACCTTAGAAGGAAAAAGAGCATTGGACGGACAGTCCTCACATATTATCT
CTAGAGGCAAGGAAGGAACTGCAGCTGTTTGAATCCAGATGACTAAAAGA
AGCACTTGTGTAATGTGTGGATTCTTTGCTGCCTTTAACGTTATTTACTT
TACACACAAAAGTGCCTCCTATAGGTATTACACCACAAGAGCAAGGCTCA
TCTAATGTTACAGAAGGAATGCATGGTCCAGATATTCTCCAATCTACTAA
TACTTCTTTTCCTTTCAGCCCAACAGGTACAATGGGATGTTTTAATTAAT
CTATCATGGCTAATTCATTATGACTTAAATATAATACTGGCCTAAACCCA
CATCTAATTCCTTTGCTTATTGGTCCTTTCGCCTGTAATCTCATGCTTGT
CCTTTGTTGTGCCATAGAACCTGTCCCTGTCCTACTTTCCCCCATTTTTT
GTATGCCACCCTTATGCTCCTTGATCTTCTTCATTTTC
CAACACAAATTATCGATGCAGTGTGAXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACC
GAATGGCTGAGAAGCACCTGAAAAAATACTCCCCATCCTTAATCATCAGG
GAAATGCAAATCAAAACCCTGAGATTCCACCTCACACCAGTCAGAATGGC
TAAGATCAAAAATTCAAGTTACAGCAGATGCTGGCAAGGATGTTGAGAAA
GAGGAACACTCCTCCATTGTTGGTGGGATTGCACGCCTTGTACAACTACT
CTGGGAAATTAGTCCTTGTGGTTCCCTCAGAAAATTGGACATAGTACTTA
CCGGAAGATCCAGCCTAACCTTCTCCTGGGGCATTAAACCCGAAAAAGTC
CCAAATCGGGAAGAAGGGAAAATGGGTTCCACTTTGGGCCCATATGCCAG
CTTCTTTTTACAAACCCCCTTAACCCCCGGGGAAAAAACCCCCAAAGCCC
CCCCCCCCCCTGGGGGGGGGTGCCCCAAAAAAAAAAAGTGGGGGATATAT
TTTTACAAGGTGGGGCTTTTTCCTCCCTTTTTTATAAAATAGGGGGATTT
TTTTTTAACTTTTCCTCTTTTAACATAGGGGGGTGTCCTCTGTGGGGGGT
TCTCCCCTCTCCGCGGCGTGGTTTGTATACCTTCCCCCCATTTACCGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no110_a24.b1 MSMg01no110_a24.b1 CHROMAT_FILE:
MSMg01no110_a24.b1 PHD_FILE: MSMg01no110_a24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:13:30 2005
         (367 letters)



>mm_chr8_63026019_63026785
          Length = 767

 Score =  648 bits (335), Expect = 0.0
 Identities = 352/363 (96%), Gaps = 9/363 (2%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctccattttgctgttgttgttgttgttgttgttgttgtggatttatgagagcc 64
           ||||||||||||||         |||||||||||||||||||||| ||||||||||||||
Sbjct: 604 gaattctctccatt---------ttgttgttgttgttgttgttgtagatttatgagagcc 554

                                                                       
Query: 65  tataacaaaacctaactttgcaacctaggcaagctagggcagagcaagaaaacagaattt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 tataacaaaacctaactttgcaacctaggcaagctagggcagagcaagaaaacagaattt 494

                                                                       
Query: 125 gtttctcaattctttcctggccttgtgagctcaacaaggtggtatttgcaatgcactaat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 gtttctcaattctttcctggccttgtgagctcaacaaggtggtatttgcaatgcactaat 434

                                                                       
Query: 185 ctatttaaaaccttagaaggaaaaagagcattggacggacagtcctcacatattatctct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 ctatttaaaaccttagaaggaaaaagagcattggacggacagtcctcacatattatctct 374

                                                                       
Query: 245 agaggcaaggaaggaactgcagctgtttgaatccagatgactaaaagaagcacttgtgta 304
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 373 agaggcaaggaaggaactgcagctatttgaatccagatgactaaaagaagcacttgtgta 314

                                                                       
Query: 305 atgtgtggattctttgctgcctttaacgttatttactttacacacaaaagtgcctcctat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 atgtgtggattctttgctgcctttaacgttatttactttacacacaaaagtgcctcctat 254

              
Query: 365 agg 367
           |||
Sbjct: 253 agg 251


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 767
Length adjustment: 9
Effective length of query: 358
Effective length of database: 758
Effective search space:   271364
Effective search space used:   271364
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)