Query= MSMg01no110_c05.b1 MSMg01no110_c05.b1 CHROMAT_FILE:
MSMg01no110_c05.b1 PHD_FILE: MSMg01no110_c05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:13:37 2005
(659 letters)
>mm_chr8_13968124_13969182
Length = 1059
Score = 1239 bits (641), Expect = 0.0
Identities = 653/657 (99%), Gaps = 1/657 (0%)
Strand = Plus / Minus
Query: 4 ggaattcttagttattccatatgcgttttagaatcagtttatcactgtttgtagagaagg 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 871 ggaattcttagttattccatatgcgttttagaatcagtttatcactgtttgtagagaagg 812
Query: 64 cagccgagcctcccgtagggactgaacctgtagatcagtttcaggaacattgctaagtta 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 cagccgagcctcccgtagggactgaacctgtagatcagtttcaggaacattgctaagtta 752
Query: 124 gcagtactttagtcttctgattcataaaatatgagatgatttttcatttcttcagacctt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 gcagtactttagtcttctgattcataaaatatgagatgatttttcatttcttcagacctt 692
Query: 184 gcaagac-ttttaaaaaaattataattttcatagactaaatatgaaatcttgctgtctat 242
||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 gcaagacttttttaaaaaattataattttcatagactaaatatgaaatcttgctgtctat 632
Query: 243 ttctagttgcaattgtaagtagaattgcttcaatttgatttttatattattcattgctga 302
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 ttctaattgcaattgtaagtagaattgcttcaatttgatttttatattattcattgctga 572
Query: 303 tgtatatttttatatcttgcttatatatgtgatgtttgcttatctcttattcgttgtaag 362
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 571 tgtatatttttatatcttgcttatatatgtgatgtttgcttatctcttattcattgtaag 512
Query: 363 agttaaggcttctgcacgtgggaacagttttccttcttctgcagtctagatgcccctagg 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 agttaaggcttctgcacgtgggaacagttttccttcttctgcagtctagatgcccctagg 452
Query: 423 ttccttttcttcactgatctgttgggcctcttttcaagtcttctcttcttgttcctgatt 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 ttccttttcttcactgatctgttgggcctcttttcaagtcttctcttcttgttcctgatt 392
Query: 483 ctagggggaaagccttcggtatttcacctgtgagtgtgaaggcagctatggagtttctta 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 ctagggggaaagccttcggtatttcacctgtgagtgtgaaggcagctatggagtttctta 332
Query: 543 aatgtccatcatgaacttagagctgagtacatttttatcatgaaaagatggtagattttg 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 aatgtccatcatgaacttagagctgagtacatttttatcatgaaaagatggtagattttg 272
Query: 603 tcataaattttccatgtccttatcatgtgaattctatttcttattttcttgctatga 659
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 tcataaattttccatgtccttatcatgtgaattctatttcttattttcttgctatga 215
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1059
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1049
Effective search space: 680801
Effective search space used: 680801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no110_c05.g1 MSMg01no110_c05.g1 CHROMAT_FILE:
MSMg01no110_c05.g1 PHD_FILE: MSMg01no110_c05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:13:37 2005
(494 letters)
>mm_chr8_13950851_13951744
Length = 894
Score = 917 bits (474), Expect = 0.0
Identities = 489/494 (98%)
Strand = Plus / Plus
Query: 1 tgaccaggatcaggtacgtggatggtgaggaagagggtgaagctcagtacctgcctcctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgaccaggatcaggtacgtggatggtgaggaagagggtgaagctcagtacctgcctcctc 260
Query: 61 cttaaggcatctatagccagaaagggacacaggtaggctttcgggagctttctcggggtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttaaggcatctatagccagaaagggacacaggtaggctttcgggagctttctcggggtc 320
Query: 121 cagttcctatgcgtgttaatcttaataaaggtcactgtttggggtggggaagatgtattt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagttcctatgcgtgttaatcttaataaaggtcactgtttggggtggggaagatgtattt 380
Query: 181 ccaagggatgggtacattttttaaaaaagaaactgggcaaatttaaacaaaacaaaccca 240
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 381 ccaagggatgggtacattttttaaaaaagaaactggacaaatttaaacaaaacaaaccca 440
Query: 241 caccacccctggcatgctcccgtctctcagctgaagcctacgagaaaaatttgcttatgg 300
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caccatccctggcatgctcccgtctctcagctgaagcctacgagaaaaatttgcttatgg 500
Query: 301 gcttacttagttaactcactaagagcggcagactggaagacacccagggcactcaatgca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 501 gcttacttagttaactcactaagagcggcagactggaagacacccagggcactcagtgca 560
Query: 361 ccggtcacactccaggtgacagcccagtagagctggctcacctaatgagaaggtatatgt 420
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 561 ccggtcacactccaggtgacagcccagtatagctggctcacctaatgagaaggtatatgt 620
Query: 421 gcagaagttcagcccaaactgtctgtcagtcggcttatggaaggtggatggctacttcct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gcagaagttcagcccaaactgtctgtcagtcggcttatggaaggtggatggctacttcct 680
Query: 481 gggttgaggacggt 494
|| |||||||||||
Sbjct: 681 ggtttgaggacggt 694
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 894
Length adjustment: 10
Effective length of query: 484
Effective length of database: 884
Effective search space: 427856
Effective search space used: 427856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
