BAC Information

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BAC

Clone NameMSMg01-110C15
Chromosome8 (Build37)
Map Location 79,484,407 - 79,484,611
singlet/doubletsinglet
Overlap geneNr3c2
Upstream gene1700007B14Rik, LOC100039185, EG631594, LOC666226, LOC100039211, LOC384847
Downstream geneArhgap10, LOC100039235, AI931714, Tmem34, Ednra
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-110C15.T7 (MSMg01no110_c15.b1)MSMg01-110C15.TJ (MSMg01no110_c15.g1)
ACCAG323161AG323162
length714750
length of high quality
(start - end)
532 (44 - 575)205 (87 - 291)
definitionCHROMAT_FILE: MSMg01no110_c15.b1 PHD_FILE: MSMg01no110_c15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:13:39 2005CHROMAT_FILE: MSMg01no110_c15.g1 PHD_FILE: MSMg01no110_c15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:13:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTGTTCAGCTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTC
TGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTA
TCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTT
TGTCCTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTA
GGTCCCATTTGTCAATTCTCGATCTTACAGAGCAAGCCATTGCTGTTCTG
TTCAGGAATCTTTCCCCTGTACCCATATCTTCAAGGCTTTTCCCCACTTT
CTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCC
ACTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCGCATT
CTTCTACATGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGCT
GTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGAC
CATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTCT
ACTTGTCTGTCTCTATACCAGTACCATGCAGTTTTTATCACAATTGCTCT
GCTATAAAGCTTTATTTCATGCACGGCGATTCCACCACCAGTTCTCTTTT
TCTCGAAAAGATTC
TGCCTTTNNNNATCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTATCATTCTCAGAC
AAAAGCCTGCCAAAATGGGATTTCAGGTTGGGCCCCAATGTCAGACTGTA
TTAGAATTGCAACATTCAGGGAAGGAAGTAGAAGGGAAGGTAAGCAGGTA
TTTATGGGGATGAGGGAGAAGTGATGTATGCGAACACCAGTGTTGGAATC
TCCTACCAAGAGAACAGGCTGGATGGCTGAGGGACTCAGGACACTGGCAA
GAAGGCAACAAGCTCCTATTCAGATTGCTGCTGTTAGCTGGATGCCATGC
GACCCCCCATCTGAGTGTGCTATATATCATCTCACCGGGAACCAAAGGCT
ACACCACAGTTCGCTTGTTGTCCCCCCCCCCACTCTCACTCTTACATATA
TCCGAGAGTTCCACTTTAACCGTCATGAACCATCACCCCTGTATTACTAT
TTTGCTCTTACCCGCTCTCTGTTTACCTGACCTACTCCTTTCCTCCCTCC
ATTCTCTCCCGCCCCCCTTGCGCCTTTACCCATTCGAGCTTAGCGCACCA
ACTCTCTTCCTGCCATTCTCTTTCTCTTTCGCCTCTCTTTTTTCTTGCTT
CCTTTGTAGCGCTCGTCACTCCCCACCCATCTTTCCCTCCCCTAACTTCC
TCCTTATTATTACCCTCATTTCCTCTTTTCTCCCTCTTCTCGCCCTTTTT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no110_c15.g1 MSMg01no110_c15.g1 CHROMAT_FILE:
MSMg01no110_c15.g1 PHD_FILE: MSMg01no110_c15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:13:39 2005
         (205 letters)



>mm_chr8_79484207_79484811
          Length = 605

 Score =  366 bits (189), Expect = e-106
 Identities = 201/205 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatcattctcagacaaaagcctgccaaaatgggatttcaggttgggccccaatgtcagac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 tatcattctcagacaaaagcctgccaaaatgggatttcaggttgggccccaatgtcagac 346

                                                                       
Query: 61  tgtattagaattgcaacattcagggaaggaagtagaagggaaggtaagcaggtatttatg 120
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 345 tgtattagaattgcaacattcagggaagaaagtagaagggaaggtaagcaggtatttatg 286

                                                                       
Query: 121 gggatgagggagaagtgatgtatgcgaacaccagtgttggaatctcctaccaagagaaca 180
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 285 gggatgagggagaagtgatgtatgcgaacaccagtgttggaatctcctacaaagagaaca 226

                                    
Query: 181 ggctggatggctgagggactcagga 205
           ||| ||||||||||||||| |||||
Sbjct: 225 ggcaggatggctgagggacgcagga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 205
Length of database: 605
Length adjustment: 8
Effective length of query: 197
Effective length of database: 597
Effective search space:   117609
Effective search space used:   117609
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)