Query= MSMg01no110_d04.b1 MSMg01no110_d04.b1 CHROMAT_FILE:
MSMg01no110_d04.b1 PHD_FILE: MSMg01no110_d04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:13:42 2005
(574 letters)
>mm_chr8_18681880_18682854
Length = 975
Score = 1019 bits (527), Expect = 0.0
Identities = 560/571 (98%), Gaps = 1/571 (0%)
Strand = Plus / Minus
Query: 5 gaattctcagagatctgcctccctttgcctcgatcaaaacataaactgtggcaaaagcct 64
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct: 775 gaattctcagagatctgcctgcctttgcctcgatcaaaacataaactgtgacaaaagcct 716
Query: 65 gtctatggccacaaagtcttccctgtcttctttctagctccatcctgacaatgactgacc 124
||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct: 715 gtctatgcccacaaagtcttccctgtcttctctctagctccatcctgacaacgactgacc 656
Query: 125 agacttcatctccatggagtcgtctatgatggagatatcattaaaacatcatctggcctg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 agacttcatctccatggagtcgtctatgatggagatatcattaaaacatcatctggcctg 596
Query: 185 tgaccttgtgaaaggttgttagagtttttatcaattatgactttaat-aagcttcagaaa 243
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 595 tgaccttgtgaaaggttgttagagtttttatcaattatgactttaataaagcttcagaaa 536
Query: 244 agtgtcaaggttctttgcatgataacactacatgctaatatttgctgacaccatatagat 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 agtgtcaaggttctttgcatgataacactacatgctaatatttgctgacaccatatagat 476
Query: 304 agtcttgacctgctatagattagcaagccagggcttggaatgtcactgcttccccaagga 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 agtcttgacctgctatagattagcaagccagggcttggaatgtcactgcttccccaagga 416
Query: 364 cacagtggctgtgaataaggttagtatgaaacccatccatttgcagactatcatgtgaaa 423
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 415 cacagtggctgtgaataaggttagtacgaaacccatccatttgcagactatcatgtgaaa 356
Query: 424 gttggagcctttctgagaataaagatgagcccctaggtcacctctggaactaatgtgagt 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 gttggagcctttctgagaataaagatgagcccctaggtcacctctggaactaatgtgagt 296
Query: 484 cagagagggtggaagtgttgaacccaagactcacaaactgtgagcatgaatcccctggac 543
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 cagagactgtggaagtgttgaacccaagactcacaaactgtgagcatgaatcccctggac 236
Query: 544 tatgaaccatttattacaggtttgcaggcca 574
||||||||| |||||| ||||||||||||||
Sbjct: 235 tatgaaccacttattaaaggtttgcaggcca 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 975
Length adjustment: 10
Effective length of query: 564
Effective length of database: 965
Effective search space: 544260
Effective search space used: 544260
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no110_d04.g1 MSMg01no110_d04.g1 CHROMAT_FILE:
MSMg01no110_d04.g1 PHD_FILE: MSMg01no110_d04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:13:42 2005
(479 letters)
>mm_chr8_18587326_18588204
Length = 879
Score = 648 bits (335), Expect = 0.0
Identities = 411/479 (85%), Gaps = 66/479 (13%)
Strand = Plus / Plus
Query: 1 ctctcttctccatgagggacctctccgtttggtactctgctgaatctgcaggtctcactg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctctcttctccatgagggacctctccgtttggtactctgctgaatctgcaggtctcactg 260
Query: 61 gtgtgcctgggccctgggaagcggggagtaaaacatctctgggatcaagagaagagaggg 120
|| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 261 gtctgcctgggccctgggaagcgggaagtaaaacatctctgggatcaagagaagagaggg 320
Query: 121 actataccagaggcctgtggaaacacggagggaaacagtcttaagtgattactgctgaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actataccagaggcctgtggaaacacggagggaaacagtcttaagtgattactgctgaga 380
Query: 181 ataagaggtggaagcttgcccggcagtcttaggtccagggactcaaaattgaccagttgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ataagaggtggaagcttgcccggcagtcttaggtccagggactcaaaattgaccagttgt 440
Query: 241 gattcttgtccttggcgagcagctggaaatgccctgggttccatctggtgagcagctgga 300
|||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 441 gattcttgtccttggcgagcagctggaaatgccctgggtt---tc--------------- 482
Query: 301 aatgccctgggttccatctggccagcagctggaaatgccctgggttccatctggcgagca 360
||||||||||||
Sbjct: 483 ------------------------------------------------atctggcgagca 494
Query: 361 gctagaaatgcagaacgtgtttgggggctggggctggttcctggtgtgatttcttcttat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 gctagaaatgcagaacgtgtttgggggctggggctggttcctggtgtgatttcttcttat 554
Query: 421 cttctgtcccagctagagcacacctgcatgaaggtttgaggttgtggcccagaggcaca 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 cttctgtcccagctagagcacacctgcatgaaggtttgaggttgtggcccagaggcaca 613
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 879
Length adjustment: 10
Effective length of query: 469
Effective length of database: 869
Effective search space: 407561
Effective search space used: 407561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
