BAC Information

Click to search

BAC

Clone NameMSMg01-111J19
Chromosome8 (Build37)
Map Location 86,002,286 - 86,002,544
singlet/doubletsinglet
Overlap geneLOC546077
Upstream geneEG666564, LOC675800, EG666289, Zfp330, Rnf150, LOC100039688, Tbc1d9, Ucp1, Elmod2, 4933434I20Rik, Clgn, Scoc
Downstream geneLOC675854, Olfr370, Ndufb7, Gpsn2, Dnajb1, Gipc1, Ptger1, Pkn1, Ddx39, Cd97, EG384857, Lphn1, Asf1b, Prkaca, Samd1, 1700067K01Rik, 2210011C24Rik, 4432412L15Rik, Il27ra, Rln3, C330011M18Rik, Rfx1, BC057552, LOC100039920, Podnl1, Cc2d1a, 4930432K21Rik, Nanos3, Zswim4, D8Ertd738e, 2410018C20Rik, Ccdc130, Cacna1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-111J19.T7 (MSMg01no111_j19.b1)MSMg01-111J19.TJ (MSMg01no111_j19.g1)
ACCAG324238AG324239
length1,0791,077
length of high quality
(start - end)
273 (56 - 328)270 (58 - 327)
definitionCHROMAT_FILE: MSMg01no111_j19.b1 PHD_FILE: MSMg01no111_j19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:16:09 2005CHROMAT_FILE: MSMg01no111_j19.g1 PHD_FILE: MSMg01no111_j19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:16:10 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CCTAAAGGCCCCCGNANTTGAAAAAATGTTCAANATNNTCCCTTTAAAAG
CCCCTGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAAT
GGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAG
AAAGAGGAACACTCCTCCATTGTTGGTGGGAGTGCAGGCTCGTACAACCA
CTCTGGAAATTAGTCTGGCGGTTCCTCAGAAAACTGGACATAGTACTACC
GGAGGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAA
CAGGTAAGAAGGACACATGCTCCACTATTTTTTTAGCAGCCTTATTTATA
ATAGCCAGAAGCTGGAAAGAACCTAGATGCTTTTTATCACACGAATGGAT
ACAGAAAATGTGGCACATCTACACAATGGAGTACTACTCAGCTATTAAAA
AGAATGAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATC
ATCCTGAGTGAGGTCACACATTCACAAAGAAACTCACACAATATGTATTC
ACTGATAACTGGATACTAGCCCCAAACCTAGGATACCCAAGATATAAGAT
ATAATTTGCTAAACACATGAAACTTCAAGAAGAATGAAGACTGAAGTGTG
GACACTATGCCCCTCCTTAGATTTGGGAACAAAACACCCATGGAAGGAGT
TACAGAGACCGAGTTTGGAGCTGAGATTGACAGGATGGACCATGTATAGA
CTGCCTTATCCAGGGATCCACCCCATAATCCGCATCCAAACGCTGACACC
CTTGCATACCCTAGCAAGATTTTTATTGAAAGGACCCCCAAGCATCTGTC
TCCTTTGTGAGACTATGCCCGGGGCCCCGCAAACACAGAATTGGATGCTT
CCCGTCCGTCTCATGGTTGGGATCATATGGTCCCCCCTTGGTAGGACCTT
CAGAAAGCTTTCCCCGGAAGCTTAAGGGGATCCTGCCACCCCTTTAGGGG
GGTAAACACCCTTTTGTAGCCTTAACCCGTTACCCCCCGGAATCTCTTGG
ACCCCTTGGCTTCCCAATATAATTCCAAA
TATTCAAGAGGCCTCAGCCTCCTCTATAGTAGGCACCACTACCTGTTAAA
GGCTGGNACTGAGGGCAGCCAGTTTCTCCATAGAGCTCTCAGAGTCCAAT
GCATATGTGTTCTCGCTGATCTTTGTCTCTGCTTGGACTTGATATTCAAG
CTTTGGTGGGTAGTGAAGGTTGAGTGACTGGTAGAGACAGAAGTTGACAA
AGCCCAGAAGTGTGGTATAAAACTCAGTGAAGGTGGCCAGGACCCTGTAG
TCCACATCATGATCATCTTTTGGATGATCATGGGAGAAAGCATAGGGTGC
AATCCATACAATGGGCTGACCCAGCTCTTTTTTTTGATAATAAATGCCTT
TAATGGACAGGAAGACCTTGCGCACGGCTCGTTTTTTGCCCACCTAGTGC
AGGAACTCCACAGTGAGCCGGGGGCGGCACAACTGAAAGGTCTGCACGTG
ACACTTGCCAGTCCGAATGAAGGTGGAGAAGAGGAAGCACATTGACAGGG
CATCATCGAGGTCCTGCAGAGCATCGATAAATGTCGGGTACCGCTCCTTG
ACAATGTGGTCAAGTTTGCAGCAGGTTTTATTGTCCTTCAGGCGCTCCAT
AGCATTCCATTCGCTCTTTCCATGGGCTTTGCTGAGCTTCGGAACAAACA
CCTTTGTACTCTCGGAACTTGTTGACGATGGTCTCATGTAGGATGAATTT
ATTGTCTTTGATAAGGTAAAATGTCCAGGCTGCTGTGGAACCCTTGTTAA
CTTTCTTCTTATGCTTGGGTTCGTGAGGATAAATTCCTTTTTAGGATGTT
CCTTCTCCCTGAATTCTGTTAGGTTTTTCTTGCTTTTCTTTCTGGGCCTT
GTTTTTGTTTGATATATTTGTTGGCTAGATCCTAATTCCTTTCTTTCTTC
TTTTCCATACCTTCCTATAACTCCTGGTTGAAAAAATTCATGGTTACTCC
ATGATCAACCCAATCCTTTTGTTCCTAACTGCTGAATAAAACCCCCTTTT
GTGATAATTGTCCCCCTTCAATTGTAGGTTATCTTTAGGTTTGTTTATCG
GTTTCCGAAATTTTATTTTATTTACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no111_j19.g1 MSMg01no111_j19.g1 CHROMAT_FILE:
MSMg01no111_j19.g1 PHD_FILE: MSMg01no111_j19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:16:10 2005
         (270 letters)



>mm_chr8_86002086_86002755
          Length = 670

 Score =  364 bits (188), Expect = e-105
 Identities = 245/268 (91%), Gaps = 9/268 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgagggcagccagtttctccatagagctctcagagtccaatgcatatgtgttctcgct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 201 actgagggcagccagtttctccatagagctctcagagtccaatgcatatgtgtcctcgct 260

                                                                       
Query: 61  gatctttgtctctgcttggacttgatattcaagctttggtgggtagtgaaggttgagtga 120
           ||||||||||||||||||| |||||  |||||||||||||||||||||||||||||||||
Sbjct: 261 gatctttgtctctgcttgggcttgaccttcaagctttggtgggtagtgaaggttgagtga 320

                                                                       
Query: 121 ctggtagagacagaagttgacaaagcccagaagtgtggtataaaactcagtgaaggtggc 180
           ||||||||||  ||||||||| |||||||| ||  ||||||| |||||||||||||||||
Sbjct: 321 ctggtagagatggaagttgacgaagcccaggagcatggtatagaactcagtgaaggtggc 380

                                                                       
Query: 181 caggaccctgtagtccacatcatgatcatcttttggatgatcatgggagaaagcataggg 240
           || |||||||||||||||||| || ||       ||||||||||||||||||||||||||
Sbjct: 381 catgaccctgtagtccacatc-tg-tc-------ggatgatcatgggagaaagcataggg 431

                                       
Query: 241 tgcaatccatacaatgggctgacccagc 268
           |||||||||||| ||| |||||||||||
Sbjct: 432 tgcaatccatacgatgagctgacccagc 459


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 270
Length of database: 670
Length adjustment: 9
Effective length of query: 261
Effective length of database: 661
Effective search space:   172521
Effective search space used:   172521
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)