BAC Information

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BAC

Clone NameMSMg01-112C01
Chromosome8 (Build37)
Map Location 46,948,041 - 46,948,404
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039508, Fat1, LOC100039673, Mtnr1a, EG622523, F11, Klkb1, Cyp4v3, BC035537, Tlr3, Sorbs2
Downstream genePdlim3, Ccdc110, 1700029J07Rik, 1810047C23Rik, Ankrd37, Lrp2bp, Snx25, 4933411K20Rik, Slc25a4, LOC621269, LOC100039875, LOC667325, Helt, LOC667337, Acsl1, Mlf1ip, Ccdc111, Casp3, Irf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-112C01.T7 (MSMg01no112_c01.b1)MSMg01-112C01.TJ (MSMg01no112_c01.g1)
ACCAG324622AG324623
length732812
length of high quality
(start - end)
372 (36 - 407)49 (61 - 109)
definitionCHROMAT_FILE: MSMg01no112_c01.b1 PHD_FILE: MSMg01no112_c01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:17:11 2005CHROMAT_FILE: MSMg01no112_c01.g1 PHD_FILE: MSMg01no112_c01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:17:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGGATCCGCGGAATTCCAAT
GTTCCTTGCCTCCCTCCTAATTCTTAACTTCCCAGGTGAATCTCACATGG
ACATTTGCAAGGTTCATACCACCAGGGGCAACATCTAGTAGGTAATATCA
AAAATTAGGCACTTCATCCATGAATATGTCTGTGAATACACTTGACTATA
TCAATAGATGAATGAGGTTTATTATAAAATACTGGTTGGTATATTTGTGG
CAGCGAAAAAGTTTCTTGATTTTCATTTGCATGCTTAAGACACCGGAAAG
TCAATAGCATAGCTCATAGGTGTGAGCACTGAAGCACTCATGGTGAGATT
TCAGACAAAGCCTATAGATCTGAGAGTAAGGAATTAGAGTAGAAGATAAA
GGTTCCATCTCTAGCACTTAGACTACATCCAATCACCCTCCAGCTTTTGT
TCAACTTAGCCCCTCAGTGGATGGATTAATGCTTCCTCGCCGCTACGAAA
TTTATCTACTTTGCTGGGAGAAATACTAATTTCTCCCAGAAACATCTTCC
ATAGATTAACCCCTTTGAGACCATGTTTACCCACCACTTTTGGAACCCTA
TGGCCCAGTCAAGTTGCCACACACATTACTCCGGCACATCCTATATCCCC
GTCCTTAATTTGCCCCCGCACTATCTCCTGTTTCCCCATTACACTTTATG
TTTTTCCCCATATCTCTTTGCGTATCCGCTCG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGCGC
GAATTACCAGGGCCAAAAAGTGGGAGTGGGTGGGTAGGGCAGTGGGTGGG
AGGGTATGGGGGACTTCTGTTTTTTTAGTTACTATTCCCCTAATCCTCTA
TTTTCCATCGCTCCGTTTATAGCTATACAATATTATCCTCCTCTTCCTCT
GTCTTTGTACCCCCCATGCAAGGACAATTACCCCTTATTCCGGCTTATTC
CGGTCCTTTTCTTACTACCACTTTCATATATTATAATACCACCCCCGTTT
GGCTACAACCAAATGAAAAATTTTAATAGGTCACGCCAACATATATTAAA
CCCACCCATTTTTTATTAAATCCCGCGACCGCTTTTTTCAGATTTCGCCT
TCCACTTTTTGCACGTTATAATATCTACCCTTATCCGATTGATATTCACA
CTATTACCTTTTTCCCCTCTTTTCCTTTCACGTACCCAGTTTTAATAACG
GGAATCCCCTACACCCATCCTTTCCTCCCATCTTTAACCACATTTTCCAT
ATCTCTACCCTATCTACTCAACTTTATCACCCATTATTATTTTTTTCCCC
TATATATACCCATATTCCCCTTTCCCTAGCTCTTATACCGCCACTGGAAA
TCCAACCATTCCCATATGCGGCCAACCTTTTTAATTTCTATGCACCTCCA
TTAAAAGCACCCTAATCCACCTTAGAGATTACCTTTATACTATATCTTAT
TCCACCTATTCAGCTACACGTACATTTACACCATTCTTTAACACACCATC
CCTTCTTTTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no112_c01.b1 MSMg01no112_c01.b1 CHROMAT_FILE:
MSMg01no112_c01.b1 PHD_FILE: MSMg01no112_c01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:17:11 2005
         (372 letters)



>mm_chr8_46947837_46948608
          Length = 772

 Score =  658 bits (340), Expect = 0.0
 Identities = 358/364 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   ggaattccaatgttccttgcctccctcctaattcttaacttcccaggtgaatctcacatg 64
           |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ggaattccaatgttccttgaatccctcctaattcttaacttcccaggtgaatctcacatg 264

                                                                       
Query: 65  gacatttgcaaggttcataccaccaggggcaacatctagtaggtaatatcaaaaattagg 124
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gatatttgcaaggttcataccaccaggggcaacatctagtaggtaatatcaaaaattagg 324

                                                                       
Query: 125 cacttcatccatgaatatgtctgtgaatacacttgactatatcaatagatgaatgaggtt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cacttcatccatgaatatgtctgtgaatacacttgactatatcaatagatgaatgaggtt 384

                                                                       
Query: 185 tattataaaatactggttggtatatttgtggcagcgaaaaagtttcttgattttcatttg 244
           ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 385 tattataaaatactggttggtatatttgtgggagtgaaaaagtttcttgattttcatttg 444

                                                                       
Query: 245 catgcttaagacaccggaaagtcaatagcatagctcataggtgtgagcactgaagcactc 304
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 445 catgcttaagacaccggaaagtcaatagcatagctcaaaggtgtgagcactgaagcactc 504

                                                                       
Query: 305 atggtgagatttcagacaaagcctatagatctgagagtaaggaattagagtagaagataa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atggtgagatttcagacaaagcctatagatctgagagtaaggaattagagtagaagataa 564

               
Query: 365 aggt 368
           ||||
Sbjct: 565 aggt 568


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 772
Length adjustment: 9
Effective length of query: 363
Effective length of database: 763
Effective search space:   276969
Effective search space used:   276969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)