BAC Information

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BAC

Clone NameMSMg01-112E22
Chromosome8 (Build37)
Map Location 80,496,574 - 80,496,955
singlet/doubletsinglet
Overlap genenone
Upstream geneNr3c2, Arhgap10, LOC100039235, AI931714, Tmem34, Ednra
Downstream geneEG622803, Ttc29, Pou4f2, LOC100039422, Rbmxrt, Slc10a7, LOC100039466, Lsm6, EG666340
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-112E22.T7 (MSMg01no112_e22.b1)MSMg01-112E22.TJ (MSMg01no112_e22.g1)
ACCAG324751AG324752
length744750
length of high quality
(start - end)
439 (71 - 509)415 (78 - 492)
definitionCHROMAT_FILE: MSMg01no112_e22.b1 PHD_FILE: MSMg01no112_e22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:17:26 2005CHROMAT_FILE: MSMg01no112_e22.g1 PHD_FILE: MSMg01no112_e22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:17:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAAGCGCGGAA
TTCCTAGCTGATGCCCCAATTGCTTGAAAGACAATGTTGCCCTGGGCCAC
CTTGGGCACAAACACGGTGGAGGGTCCCATAGTCCTCAGAGAACTCTCCA
TGCTGCAGGCACCCTAGCACATCCAGGATCTTGGGATCACTGGTGAGTGG
GATGAAACATTGGTTCCAAAACAACCGGAAGGAGCTTGTGCCAGCAGGAA
CAGAGACACAGGAAACCCACCAGACCAGCTGCTGGGGTTCATTCTAGTCA
GCTCCAGCCCTAGGAGGAGAGTCTTCCACCAGAGAGGGATCTGACCCCAG
GACTCAGGTGAGAACTTCATCTTGTATCCCAGGTCTCTCAGAGATCAGTT
CGTGCAGGCCACAGAAGCAACAGAACTTCTTGGACAGGGTATCTTCAGGC
CTTCATCCTCAGCCAGGAGGCAGAGCTGAGCACCAGACCTCTGTGCACCT
TCCCTGCCAGAGGAGAGCTTGTCTGCTTATAGTGCTCTGACCACTGGGAC
TCAGGAGAGAGTTGGACTCCATGGACCGCTGACAGAGGCTAACAGACTCA
CAGGAGGACCAAGCTCCAGCCAGATACCGCTAGAACATCTAACACCAGAG
ATTATCAGATGACGAAAGGCAAACATAAGAATCTTACTAACAGATACCAA
GACCCCTCAGCATCTTCAGAACCCAGTACTCCCACCACAGCTAG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCACAGTAAAGTGAGGTGAAGTC
AGATGAGGCAGGAAGGCTCACCCATAGCTGACATCATTCCAAGGGCTGTG
GTCCTGGACTACGTTAAAGAAGGTGGAGGGTTGGCACTGGCATTTGATTT
TCTGTTTCCTGACTGCAGATGCCACGAAACCAGCTTCCTCAAGCTCCTAC
CTCCATGCCTTGCCCACCATGGTGACTTTGCCCTTAAACTGGGAGCCAAA
ATAAGCCAAACCAAGTAGCTAGTACATCAGCAATAGAAACTATTGTCATA
GCAATCCACAGAACATGACCAGGCGAACAGAGAAGGCTGGCATGGCAGCC
TACAGTCCTGCTCTCACAGCTGTAATGGGGAAACCGGCTCTTAGGGGGCC
TGTTGTCCTGTCATGGATAAAGCACAGCCTGTTGCCAGGGAGTGTTGGTG
CACACCTTTAATCCCAGCACTTGCCAGGCATAGGCAGAGGCAGAGGCAGA
GGCAGAGGCATAGGCAGAGGCAGAGGCTGAGGCAGACGCAGATGCTGAGG
TCGAGGCAGAGTCTGAGGCAGAGCCCGAGGCTGAGGCAGATGCTGAGGTC
GATGTAGAGGCAGAGGCCGAGGCAAAGGCCCAGCCATATGCCTATGTCGT
GCGATCCTCCGATTTTGAGGCCAGCCTGTCTCCACAAAGTGAGCCTCCAC

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no112_e22.g1 MSMg01no112_e22.g1 CHROMAT_FILE:
MSMg01no112_e22.g1 PHD_FILE: MSMg01no112_e22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:17:26 2005
         (415 letters)



>mm_chr8_80496144_80496958
          Length = 815

 Score =  669 bits (346), Expect = 0.0
 Identities = 373/382 (97%)
 Strand = Plus / Minus

                                                                       
Query: 34  ggaaggctcacccatagctgacatcattccaagggctgtggtcctggactacgttaaaga 93
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 812 ggaaggctcacccatagctgacatcattccaagggctgtggtcctggactacgttaaaga 753

                                                                       
Query: 94  aggtggagggttggcactggcatttgattttctgtttcctgactgcagatgccacgaaac 153
           || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 752 agatggagggttggcactggcatttgattttctgtttcctgactgcagatgccatgaaac 693

                                                                       
Query: 154 cagcttcctcaagctcctacctccatgccttgcccaccatggtgactttgcccttaaact 213
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 692 cagcttcctcaagctcctacctccatgccttgcccaccatggtgactgtgcccttaaact 633

                                                                       
Query: 214 gggagccaaaataagccaaaccaagtagctagtacatcagcaatagaaactattgtcata 273
           | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 632 gagagccaaaataagccaaaccaagtagctagtatatcagcaatagaaactattgtcata 573

                                                                       
Query: 274 gcaatccacagaacatgaccaggcgaacagagaaggctggcatggcagcctacagtcctg 333
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||  ||
Sbjct: 572 gcaatccatagaacatgaccaggcgaacagagaaggctggcatggcagcctacagttgtg 513

                                                                       
Query: 334 ctctcacagctgtaatggggaaaccggctcttagggggcctgttgtcctgtcatggataa 393
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 512 ctctcacagctgtaatggggaaagcggctcttagggggcctgttgtcctgtcatggataa 453

                                 
Query: 394 agcacagcctgttgccagggag 415
           ||||||||||||||||||||||
Sbjct: 452 agcacagcctgttgccagggag 431


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 415
Length of database: 815
Length adjustment: 9
Effective length of query: 406
Effective length of database: 806
Effective search space:   327236
Effective search space used:   327236
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)