BAC Information

Click to search

BAC

Clone NameMSMg01-112H07
Chromosome8 (Build37)
Map Location 106,140,865 - 106,278,202
singlet/doubletdoublet
Overlap genenone
Upstream geneCdh11, EG667618, LOC100041368, 1600027J07Rik
Downstream geneLOC100041397, LOC667656, Cdh5, Bean, Tk2, Cklf, Cmtm2a, Cmtm2b, Cmtm3, Cmtm4, Dync1li2, Ccdc79, Appbp1, Car7, LOC628007, 4833426J09Rik, Cdh16, Rrad, 1110019N10Rik, EG637550, LOC382052, LOC100041473, Ces6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-112H07.T7 (MSMg01no112_h07.b1)MSMg01-112H07.TJ (MSMg01no112_h07.g1)
ACCAG324863AG324864
length729725
length of high quality
(start - end)
441 (45 - 485)338 (75 - 412)
definitionCHROMAT_FILE: MSMg01no112_h07.b1 PHD_FILE: MSMg01no112_h07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:17:37 2005CHROMAT_FILE: MSMg01no112_h07.g1 PHD_FILE: MSMg01no112_h07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:17:37 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,140,865 - 106,141,298)(106,277,865 - 106,278,202)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAAGATCCGCGGA
ATTCACTCAATTTTCCAGAAACTCTTTCCTCATCTGTCAGTTGAGAGGAT
GATAGTATTGGGACACTTTGGCTGGCAGACATAAGTGTAAAAATAAAATA
TCCTCATTCATTTATTGGACAAGCAATTATTAATTATCATCTATGTTCCA
GAAATCTCATGTTTAAAATAATACCCAGCCTCTGAAAGGAACTGGTGGCT
ACTTTCCTAAATTTGATTTATCATTACCCATAATAAATAGCAGACTTATG
ACTATGAGAAATCTATTGTTTATAATTTGATAGGAAACAGGCTTATTGCA
GAGAATTGCAAATAAGTGGGATGCTGAAAGAGGCAGGAAGATATCAGGAC
CTCTCCCAGATCCCCACAAGGCAGGTTTGTGGGCTTTAGCAAGGAGAAGA
TAAATTAAGGATCCCATTCTCTGAGTTCACATGAACGGAAGTGCTAAGGG
AGAAGACTAAGAAGTGTTGAAGGCAAGCGGAAGGTCTCAGACACTCCAGC
CATCTGCAGAAGAATATTTACATCACATCATTTACTCCCTGGGGAGTTCT
ATTGAATTTGGTATCCTCACTGAATAAGCAAAGAAATTGAGGGTTTTTTT
TTCTCACAGTGTTATATTCCTAAGATAACACCGAAGTGGTGAAAGACTTC
TAAAATATACACGTATTGCTCTGATGGGA
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAATTACTGTTGTCTCTCTATACATGA
CTATGAGGCCATTCACTGGAGTATGGTCAACCTATTAGAGACAACACTGC
AAAACAGAAGCAAAACCAAACCTTTCCTCCCCCTGGCAACCATCAAGTGT
CAAAATTAGCTGGCCTTCTAAACTTGTAGATTTTATTTGTGATTAAACAG
GAGAATGATCTTTTTACGAGATGCAGGCTAACATGCTTTATACAGTGCAT
GCATTTTCAAAGAAAACAGGGAGAACATTAATAATTGGTGGACAAATGAA
GTCGATTGTACTTTCCTTCAGTTTTTCTATAGACTCAAACATTTCCAATG
GGAAACATGAGGAGAATGAGGTTGGAATTAAGAAATGACCCTGTCAGTGG
TGGTGAGTGAGAAGAGAGTGAGATGGTGAACTTGAGATAGACAGGAAGGG
TGGAAACTCGATTGCTTTCAAAGTCAGATCCACATTTGGTGGGTTTGCCA
ACTCTGAAAAGCCTGACATCTCAACATTCCCCTTATCTGTTCTCTGCCAA
GGACCACTTCCCCAACTTAAAGGTTATTCTAGGCATTCACCTGTGTCTGC
GCAATCACCTGACTATCTTGTATGTCCTTAACCCCTCATACTTGACCATT
ATTGGATGCTGCCCCATTGCTTAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no112_h07.b1 MSMg01no112_h07.b1 CHROMAT_FILE:
MSMg01no112_h07.b1 PHD_FILE: MSMg01no112_h07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:17:37 2005
         (441 letters)



>mm_chr8_106140658_106141498
          Length = 841

 Score =  770 bits (398), Expect = 0.0
 Identities = 425/434 (97%)
 Strand = Plus / Plus

                                                                       
Query: 8   ttcactcaattttccagaaactctttcctcatctgtcagttgagaggatgatagtattgg 67
           |||||||||  ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 208 ttcactcaaccttccagaaactctttcctcatctgtcagttgagaggatgatggtattgg 267

                                                                       
Query: 68  gacactttggctggcagacataagtgtaaaaataaaatatcctcattcatttattggaca 127
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 gacactttgcctggcagacataagtgtaaaaataaaatatcctcattcatttattggaca 327

                                                                       
Query: 128 agcaattattaattatcatctatgttccagaaatctcatgtttaaaataatacccagcct 187
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 atcaattattaattatcatctatgttccagaaatctcatgtttaaaataatacccagcct 387

                                                                       
Query: 188 ctgaaaggaactggtggctactttcctaaatttgatttatcattacccataataaatagc 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 ctgaaaggaactggtggctactttcctaaatttgatttatcattacccataataaatagc 447

                                                                       
Query: 248 agacttatgactatgagaaatctattgtttataatttgataggaaacaggcttattgcag 307
           ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct: 448 agacttatgactatgagaaatctattgtttagaatttgataggaaacgggcttattgcag 507

                                                                       
Query: 308 agaattgcaaataagtgggatgctgaaagaggcaggaagatatcaggacctctcccagat 367
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 agaattgcaaagaagtgggatgctgaaagaggcaggaagatatcaggacctctcccagat 567

                                                                       
Query: 368 ccccacaaggcaggtttgtgggctttagcaaggagaagataaattaaggatcccattctc 427
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 ccccagaaggcaggtttgtgggctttagcaaggagaagataaattaaggatcccattctc 627

                         
Query: 428 tgagttcacatgaa 441
           ||||||||||||||
Sbjct: 628 tgagttcacatgaa 641


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 441
Length of database: 841
Length adjustment: 9
Effective length of query: 432
Effective length of database: 832
Effective search space:   359424
Effective search space used:   359424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no112_h07.g1 MSMg01no112_h07.g1 CHROMAT_FILE:
MSMg01no112_h07.g1 PHD_FILE: MSMg01no112_h07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:17:37 2005
         (338 letters)



>mm_chr8_106277528_106278265
          Length = 738

 Score =  623 bits (322), Expect = 0.0
 Identities = 334/338 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aattactgttgtctctctatacatgactatgaggccattcactggagtatggtcaaccta 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 675 aattactgttgtctctctatacatgactatgaggccatgcactggagtatggtcaaccta 616

                                                                       
Query: 61  ttagagacaacactgcaaaacagaagcaaaaccaaacctttcctccccctggcaaccatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 ttagagacaacactgcaaaacagaagcaaaaccaaacctttcctccccctggcaaccatc 556

                                                                       
Query: 121 aagtgtcaaaattagctggccttctaaacttgtagattttatttgtgattaaacaggaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 aagtgtcaaaattagctggccttctaaacttgtagattttatttgtgattaaacaggaga 496

                                                                       
Query: 181 atgatctttttacgagatgcaggctaacatgctttatacagtgcatgcattttcaaagaa 240
           |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 495 atgatctttttaggagatgcaggctaacatgctttatacagtgcatgcatcttcaaagaa 436

                                                                       
Query: 241 aacagggagaacattaataattggtggacaaatgaagtcgattgtactttccttcagttt 300
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 aacacggagaacattaataattggtggacaaatgaagtcgattgtactttccttcagttt 376

                                                 
Query: 301 ttctatagactcaaacatttccaatgggaaacatgagg 338
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 375 ttctatagactcaaacatttccaatgggaaacatgagg 338


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 738
Length adjustment: 9
Effective length of query: 329
Effective length of database: 729
Effective search space:   239841
Effective search space used:   239841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)