BAC Information

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BAC

Clone NameMSMg01-113E07
Chromosome8 (Build37)
Map Location 43,456,761 - 43,457,074
singlet/doubletsinglet
Overlap genenone
Upstream geneAsah1, Frg1, LOC100039376, Gm1815, LOC671994, Zfp353, EG620772
Downstream geneLOC628212, Triml1, LOC622082, EG622117, LOC100039417, Zfp42
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-113E07.T7 (MSMg01no113_e07.b1)MSMg01-113E07.TJ (MSMg01no113_e07.g1)
ACCAG325458AG325459
length709719
length of high quality
(start - end)
317 (42 - 358)---
definitionCHROMAT_FILE: MSMg01no113_e07.b1 PHD_FILE: MSMg01no113_e07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:18:39 2005CHROMAT_FILE: MSMg01no113_e07.g1 PHD_FILE: MSMg01no113_e07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:18:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGATGCGCGGAATT
CTGTCAATGACCATCTGTAAGCTCTTTGGCATTGCACCATTATGTGAAAT
CAAAATCATTCTCATCCTGACTGCTGCATATAATTCAGTATATAAAAGTT
CTCATAAGCTTAGAAACTTAGAGTAGTGTGAATAGTCTAATGAAAAGATA
CTGACATTATGAACAGATGGTATGTCTGGAAGTGGTTGCACAAGCCTTTA
ATCCTAGCACTTGAGAGGCAGAGGTAGGGGAGTTCAAACCCAGGCAGATC
TACAAAGAGGGTTGATGCCAGCCAAGAAGATCGATAGAGACACTGTCTCA
GAACAACAGCTACAACACCCCAAATAATAGCAAAAAACCAAAACACCCAG
ATAGTATGTTTAAAATAATTATATAACTATTAAATTCCTCCTGTCAGGTC
TCTGGAAACCCTGGGGAAGAGGAGGTGGAAAGAGTCATAGGGTGTTGAGA
AGATTAGGAGAACAAGGTCCTCTAAATCAACTAAGGGAAGTTCATATGAA
TTAACAGAGAATGAAGCAGGGAGCACAGGGACTACACAGGTCTGCACCAA
GAATTCTGACTAATTATTATAGCTTTCAGGGTAATATTTTACTGGCAATC
TATGATGTGTAAAAAAGCAAGACTCTGATTACTGAAACCTTCTTCTGGGG
TACACAACN
ATGTGAAACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTCTCATCTCATGTTTAAACTATCATCGTTCTG
CTTTTTAAGATATGATTACACACTCAACCATATACAGATTAATAATTTTA
TGAGATCATTCTCGATCGGCTCCAAACGAATACTGAGCTTTTTTTCCCTT
GCATTTGTTTTCTGAACGGTAAACCGCATTACCCATTTGACATGTCCTTG
TTCATTCTATGACATTGTATGAAATCTACACAATGCTGAATCGTTCTGGG
AGACTATAAATAGATTATATTTAAATGCTATGGCATTCTTTTATCAAGGT
CTTATACAAAAACCTTCTCCACTTTTGATTCTCAGAAAACTAGTACTACC
CTCCCATGAATACTAACGAATAAACACATTTTTCCATGGAGTCTTATGAA
ATCAAAGCCAACTCGTGTCTGAACACATTAGTGCAATTAGGGCACAATTC
TCCAAGTTTCTGGTTGACTCAACAATGACATCCTATTTGGTAGTTCCTAT
GCTTTTTTTATTGTTGGTGATAACGGCTGATTTGGAACATTCCGGGTTTG
GTTGCTAATCACCACGGCATATAACCGCGGGTTCCGTGCCAAAATTTGTC
CCTCCCTTTTCTACTCTGCACCCCTCATTGATCCAATCTCAACTTTCTTG
TGGTGAACAAAATGGGAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no113_e07.b1 MSMg01no113_e07.b1 CHROMAT_FILE:
MSMg01no113_e07.b1 PHD_FILE: MSMg01no113_e07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:39 2005
         (317 letters)



>mm_chr8_43456690_43457407
          Length = 718

 Score =  592 bits (306), Expect = e-173
 Identities = 312/314 (99%), Gaps = 1/314 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgtcaatgac-catctgtaagctctttggcattgcaccattatgtgaaatcaaa 63
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gaattctgtcaatgacaaatctgtaagctctttggcattgcaccattatgtgaaatcaaa 326

                                                                       
Query: 64  atcattctcatcctgactgctgcatataattcagtatataaaagttctcataagcttaga 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atcattctcatcctgactgctgcatataattcagtatataaaagttctcataagcttaga 266

                                                                       
Query: 124 aacttagagtagtgtgaatagtctaatgaaaagatactgacattatgaacagatggtatg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aacttagagtagtgtgaatagtctaatgaaaagatactgacattatgaacagatggtatg 206

                                                                       
Query: 184 tctggaagtggttgcacaagcctttaatcctagcacttgagaggcagaggtaggggagtt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 tctggaagtggttgcacaagcctttaatcctagcacttgagaggcagaggtaggggagtt 146

                                                                       
Query: 244 caaacccaggcagatctacaaagagggttgatgccagccaagaagatcgatagagacact 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 caaacccaggcagatctacaaagagggttgatgccagccaagaagatcgatagagacact 86

                         
Query: 304 gtctcagaacaaca 317
           ||||||||||||||
Sbjct: 85  gtctcagaacaaca 72


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 718
Length adjustment: 9
Effective length of query: 308
Effective length of database: 709
Effective search space:   218372
Effective search space used:   218372
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)