BAC Information

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BAC

Clone NameMSMg01-113L14
Chromosome8 (Build37)
Map Location 74,350,449 - 74,351,066
singlet/doubletsinglet
Overlap genenone
Upstream geneArrdc2, Kcnn1, LOC100042011, Ccdc124, Slc5a5, Rpl18a, Snora68, Mtap1s, LOC100042057, LOC665858, LOC384645, LOC100041583, EG621377, 2410004L22Rik, Myo9b, 2010315L10Rik, Ocel1, Nr2f6, Ushbp1, 5430437P03Rik, Ankrd41, Abhd8, Mrpl34, 1500034J01Rik, Tmem16h, Gtpbp3, Plvap, LOC665928, Bst2, 1110012M11Rik, BC033932, Txnl6, Slc27a1, Pgls, Bcnp1, Glt25d1, Unc13a, Jak3, Insl3, B3gnt3, LOC100042289, Fcho1, EG665991, LOC665996
Downstream geneLOC385024, LOC675190, Zfp709, LOC670453, Zfp617, BC049349, Cyp4f18, LOC666033, Olfr372, Olfr373, Olfr374, Tpm4, Rab8a, Hsh2d, Cib3, 2510049I19Rik, Ap1m1, LOC384840, LOC100042405, Klf2, Eps15l1, Calr3, LOC100042421, 1700030K09Rik, Cherp, Slc35e1, Crsp7, LOC100042439, 9130011J15Rik, Tmem38a, Nwd1, Sin3b, F2rl3, Large
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-113L14.T7 (MSMg01no113_l14.b1)MSMg01-113L14.TJ (MSMg01no113_l14.g1)
ACCAG325788AG325789
length694691
length of high quality
(start - end)
618 (72 - 689)582 (72 - 653)
definitionCHROMAT_FILE: MSMg01no113_l14.b1 PHD_FILE: MSMg01no113_l14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:14 2005CHROMAT_FILE: MSMg01no113_l14.g1 PHD_FILE: MSMg01no113_l14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:14 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATCCGC
GGAATTCCAGCCATATCAGGTGAATGGGGCAGTGAGGTGCTCTGAAAACA
AAAGGAACCTCTCTCTTCTGCAGTACACTAACCCTTCCCCAATGAATGAT
CTTCCACAGTTGTCCATTAGATACCTGGGATATCAGAACAGTGGAGCTGA
ATTGTAAAATGCATCAATCAAGTATGTCACTACCTACAGCAGAGGGGAAT
TGCTGAGTTCCATGGATGGATTCTATATATGCCTTCCAAAATCTCACCTA
TTAGCTCTATGTCAAAGTAGCTTTTATGCACTAGGTGTAATTGTAATCTT
TGATGCTTACTACCTCCATCTGAGTGATAACCTAGACCTAGTCCTGGAAG
CTTCTAGCCTCTGTGAAGCTTAGCATAGGCCTAGAATATTTTCTGCCTCT
CATACTTACTGCTGAATAAGCACACCGTTATTTCTGGTTCTTTTTCATCT
CTGGCTGAATGGTTCAACTCAGGTGTTCTAGCTCAAAGCTGCTCCCCATG
CTAACTGATTCAGTCTGGATTCTCTCTTGGCCTCTGATGTTTTTTGTTCT
GCTTGACCTCAAACTAACTAGCAATTTTTTTCTAATCTTCTGACTCCTTC
ATATTCTCTGGTTCATTCTGCCTTCACCCGTGTCTTGCTGGTTA
AATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCTGTTTAGCTATTTACCCCATTTTTAAA
TTGATTTATGAGTTTCTAACTTCTTGTGTTCTTTATATATTTTGGACTTT
AGTTCTCTCTCAAGTGTAGGGTTGGTGGGTATCTTTTCCCAATATGTAGG
CTTCCATTTTTTCCTATTGACAATGTCCTTTGTCTTGCAGAAGTTTTTCA
GTTTCATGAGTCCCTATGTTTCAAGTATTGATCTTAGAGCCTGAGACATT
GGTGTTCTGTTCAGAAAATTGTCTACTGAACCAATGTATCAAGGATATTT
CCCACCTTGTCTCCTAGCAAATTTAGTGTATCTGGTTTAGTGGTCTAGAG
GTCTTTGGTGCCTGTGAACTCAAGTTTTGTGCTGGGGGATAAATATAGGT
CTATATGCATTCATCCTCTTGTAGACGTCCAGTTAGACCTGCAACATTTG
TTGAAGATATTTTCTTTCTTTTTTTCCATTGTATGACTTTTATGTCAAAA
TCAAGTGTTGGTGGGTGTGTGACTTATTTCTGGGTCTTCGATTTGATTTC
ACAGACCAACTTGTTCATTTCCATAGGTATACCATGCAGTTTTTATTCCG
ATTGCTCTGTGGTACGTCTTGAGACTAGGTATGATGATACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no113_l14.b1 MSMg01no113_l14.b1 CHROMAT_FILE:
MSMg01no113_l14.b1 PHD_FILE: MSMg01no113_l14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:14 2005
         (618 letters)



>mm_chr8_74350249_74351266
          Length = 1018

 Score =  986 bits (510), Expect = 0.0
 Identities = 591/618 (95%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaatggggcagtgaggtgctctgaaaacaaaaggaacctctctcttctgcagtacactaa 60
           |||| ||||||||||||||| ||| ||||||| |||||||||||||||||| ||||||||
Sbjct: 201 gaatagggcagtgaggtgctttgagaacaaaaagaacctctctcttctgcactacactaa 260

                                                                       
Query: 61  cccttccccaatgaatgatcttccacagttgtccattagatacctgggatatcagaacag 120
           ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct: 261 cccttccccaatgaatgatctgctacagttgtccattagatacctgggatatcagaacag 320

                                                                       
Query: 121 tggagctgaattgtaaaatgcatcaatcaagtatgtcactacctacagcagaggggaatt 180
           |||||||||||||| |||||||| ||| |||||||||||||||||||||||| |||||||
Sbjct: 321 tggagctgaattgtgaaatgcatgaataaagtatgtcactacctacagcagacgggaatt 380

                                                                       
Query: 181 gctgagttccatggatggattctatatatgccttccaaaatctcacctattagctctatg 240
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctgagttccatgtatggattctatatatgccttccaaaatctcacctattagctctatg 440

                                                                       
Query: 241 tcaaagtagcttttatgcactaggtgtaattgtaatctttgatgcttactacctccatct 300
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 441 tcaaagtaacttttatgcactaggtgtaattgtaatctttgatgcttactacctccatcc 500

                                                                       
Query: 301 gagtgataacctagacctagtcctggaagcttctagcctctgtgaagcttagcataggcc 360
           |||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct: 501 gagtgataacctaggcctagtcctggaagcttctcgcctctgtgaaacttagcataggcc 560

                                                                       
Query: 361 tagaatattttctgcctctcatacttactgctgaataagcacaccgttatttctggttct 420
           ||||||||| || |||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 561 tagaatattgtcagcctctcatacttactgctgaataagtacaccgttatttttggttct 620

                                                                       
Query: 421 ttttcatctctggctgaatggttcaactcaggtgttctagctcaaagctgctccccatgc 480
           ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |
Sbjct: 621 ttttcatctctggctgactggttcaactcaggtgttctagcttaaagctgctccccattc 680

                                                                       
Query: 481 taactgattcagtctggattctctcttggcctctgatgttttttgttctgcttgacctca 540
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 taactgattcagcctggattctctcttggcctctgatgttttttgttctgcttgacctca 740

                                                                       
Query: 541 aactaactagcaatttttttctaatcttctgactccttcatattctctggttcattctgc 600
           |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aactaactagtaattttttcctaatcttctgactccttcatattctctggttcattctgc 800

                             
Query: 601 cttcacccgtgtcttgct 618
           ||||||||||||||||||
Sbjct: 801 cttcacccgtgtcttgct 818


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1018
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1008
Effective search space:   612864
Effective search space used:   612864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)