Query= MSMg01no113_n06.b1 MSMg01no113_n06.b1 CHROMAT_FILE:
MSMg01no113_n06.b1 PHD_FILE: MSMg01no113_n06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:22 2005
(229 letters)
>mm_chr12_45217934_45218562
Length = 629
Score = 395 bits (204), Expect = e-114
Identities = 219/224 (97%)
Strand = Plus / Plus
Query: 6 gaattcatataaccaccgccctataaccaatgaatctcctactattccaatactacagag 65
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcatataaccatggccctataaccaatgaatctcctactattccaatactacagag 265
Query: 66 tctcttaaggacaaactgagttgcactagtccaaaacacaggaagcccaaactcagttgc 125
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 266 tctcttaaggacaagctgagttgcactagtccaaaacacaggaagcccaaactcagttcc 325
Query: 126 ccttgcacatctcccgccacacttgcctagtagcctgtgggcatcactgagatgcatgat 185
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 326 ccttgcacatctcccgccacacttgcctagtagcctgtgggcatcactgagatgcatgtt 385
Query: 186 tttttacctccccttccgtgcttagcatttgcacttacagattc 229
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tttttacctccccttccgtgcttagcatttgcacttacagattc 429
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 229
Length of database: 629
Length adjustment: 9
Effective length of query: 220
Effective length of database: 620
Effective search space: 136400
Effective search space used: 136400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no113_n06.g1 MSMg01no113_n06.g1 CHROMAT_FILE:
MSMg01no113_n06.g1 PHD_FILE: MSMg01no113_n06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:23 2005
(430 letters)
>mm_chr8_69413644_69414468
Length = 825
Score = 495 bits (256), Expect = e-144
Identities = 380/450 (84%), Gaps = 54/450 (12%)
Strand = Plus / Minus
Query: 1 ttgcactaggatagtcatgtatatataaaaggtaatagaagcaagtatcaaaaaaaaaaa 60
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct: 549 ttgcactaggataaccatatatatataaaaggtaatagaagcaagtatcaaaaaaataa- 491
Query: 61 aaaaaaagaaaaagaaaaaccaaattc-gtgagcagaaaaactcaaacatgtgagtttgc 119
||||||| | |||||||| |||||||||||||||||||||
Sbjct: 490 --------------------caaattcag-gagcagaagaactcaaacatgtgagtttgc 452
Query: 120 ttggttttaggactccaagtgattttagaccctgttatttcggggagggagcagacaact 179
||| ||||||||||||||||||||||||||||||||||| | || |||||||||||||||
Sbjct: 451 ttgtttttaggactccaagtgattttagaccctgttattacaggaagggagcagacaact 392
Query: 180 tatttattcttttgcctttagtagttcaataaaattaaaaaattgaaatcatagttctaa 239
|||| |||||||||||||||| |||||||||||||||| ||||| ||||||||||||
Sbjct: 391 tatt----cttttgcctttagtaggtcaataaaattaaaaa-ttgaa-tcatagttctaa 338
Query: 240 tgtatattaaataaatgcctatatctgattaatgattaagttatgaagaatatatatata 299
||||||||||||||||||||||| |||||||||||||||||||||||| || |||||||
Sbjct: 337 tgtatattaaataaatgcctatacctgattaatgattaagttatgaag--ta-atatata 281
Query: 300 attaga-------------------tttgctctattttacttggcaaaatgagttaaacc 340
|||||| |||||||||||||| |||| ||| |||| ||||||
Sbjct: 280 attagacttctcaagatgtgctctatttgctctattttatttggtaaagtgagctaaacc 221
Query: 341 acacaaaatagtggttattatcagagaaatattttcaataaagtcttcaatgtgtaaata 400
||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct: 220 acacaaaatagtggttattattaga--aatattttcaataaagtcttcaatgtgtaaata 163
Query: 401 aaaaaaagaattcttgcacttataaaccaa 430
|||||| |||||||||||||||||||||||
Sbjct: 162 aaaaaa-gaattcttgcacttataaaccaa 134
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 825
Length adjustment: 9
Effective length of query: 421
Effective length of database: 816
Effective search space: 343536
Effective search space used: 343536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
