BAC Information

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BAC

Clone NameMSMg01-114A18
Chromosome8 (Build37)
Map Location 18,646,826 - 18,647,321
singlet/doubletsinglet
Overlap geneMcph1
Upstream geneLOC665638, LOC100040466
Downstream geneAngpt2, Agpat5, LOC100040486, Xkr5, Defb40, Defb37, Defb38, Defb39, Defb12, Defb34, EG546038, Spag11, Defb14, Defb4, EG654452, Defb6, EG574081, Defb5, Defb3, Defb54-ps, LOC100040504, LOC100040514, Defb8, LOC100040528, LOC100041511, Defb7, LOC670326, LOC100040561
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-114A18.T7 (MSMg01no114_a18.b1)MSMg01-114A18.TJ (MSMg01no114_a18.g1)
ACCAG326026AG326027
length741742
length of high quality
(start - end)
456 (46 - 501)496 (77 - 572)
definitionCHROMAT_FILE: MSMg01no114_a18.b1 PHD_FILE: MSMg01no114_a18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:39 2005CHROMAT_FILE: MSMg01no114_a18.g1 PHD_FILE: MSMg01no114_a18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACCAACTTGTTTCTAATATGCAATGTTGTCTGCTATACCTGGCTG
TAATAAAGATTCTAAATATACTTTGCTAAGCTTGCCCTGAGATTTTTTTG
TTTTGTTTTGTTTTTTTTTGTTTTGTTTTTGTTTTTTTTCGAGACAGGGT
TTCTCTCTATAGCCCTGGCTGTCCTGAAACTCACTTTGTAGACCAGGCTG
GCCACGAACTCAGAAATCCGCCTGCCTCTGCTTCCTGAGTGCTGGGATTA
AAGGTGTACACCACCACGCCCGTCGAGAATTTCTAACTCTTATCCAGTAA
AATACTATAAGAAAACATGTAAGACACTCCACAATATTACAGGGACAAAT
CTGAAACATTCTAGCTATGACAATGTCAAAGTTCTAAGAGGCTGAGTTTC
CTTGAAACTCTTTGCCTCAAAACTGCTTCTAGGTTTTTAGGCCTGCCAAG
CGAGTCACTACTATAAGAGATGTAACAGGTGATTAGGGACCTAGGATGTC
TGGAGGTTGGAGCCTTAGTCCATTATGACTGTTGTCCTGAGAAGAGGAGG
CGGATACCAGGCTTTCATATACAGGGAGGAGACCACCCTAGGACAGAGGT
TTTCTAGAAACCAAGCCAACACATGGGTTTTACACTTCCCGGTCAATAAC
TGTAGGTAAAGAAAGGGCTATTGCCATTTATTCCCCCGCCC
CTATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGGAATTTGGCTGTGCCTTTAGA
TAGTCTGATAGAAGCTTTGATCTCAAACTTCACTTTCGAGTTTAAACAGC
AGTGATTCACCCAAATGACAGTTGATATTTGTTTTTCTTCTTGAAAATTC
AACATGAGTATTTGTTATTCGTCGAGTTGGGGAATTGTCACACTTCCTCT
AAGATGACACACTTTATAAAATGTCCCCGTAAACAGTTTCCTGTTGTTTA
TTCCTGCTGGGTGTGCTGAGATAGGGTGGACCCCGTCACCGGACAGATGG
GGTAGCAGACACTGAGCTTGGATTTATAACCCAGTTGTCTGCTGATCTGC
AGTTACTTTGATAAACCCTTCCTGGAAATCCAAAGCCAGGACTGGCAGAG
GTGGGCTGTGCTCAGTGGTGGTGTGGGACTCAACAGCACATGCGGCTTTG
TGAAGCCATTTAGAAACCAGCAGCAGTATATTGATGCCCACAGTGGCTGT
CCACTCCCACGAGCATGCTCGTTTTGTTTTGTTTTGTTTTGTTTTGTTTT
TTCTTGTTATGTATGACAGAAAATATTTCCACAGAAAACATTTAATAAAA
TCTTCAAAGGGTTTTGGGTACATTGTGACATGTGTAACTCAGAAGTCACC
AAATACAGCTGTGGTGGTGCGCGTGGCTGGAATCCCACATTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no114_a18.g1 MSMg01no114_a18.g1 CHROMAT_FILE:
MSMg01no114_a18.g1 PHD_FILE: MSMg01no114_a18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:39 2005
         (496 letters)



>mm_chr8_18646626_18647521
          Length = 896

 Score =  951 bits (492), Expect = 0.0
 Identities = 495/496 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggaatttggctgtgcctttagatagtctgatagaagctttgatctcaaacttcacttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggaatttggctgtgcctttagatagtctgatagaagctttgatctcaaacttcacttt 260

                                                                       
Query: 61  cgagtttaaacagcagtgattcacccaaatgacagttgatatttgtttttcttcttgaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cgagtttaaacagcagtgattcacccaaatgacagttgatatttgtttttcttcttgaaa 320

                                                                       
Query: 121 attcaacatgagtatttgttattcgtcgagttggggaattgtcacacttcctctaagatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attcaacatgagtatttgttattcgtcgagttggggaattgtcacacttcctctaagatg 380

                                                                       
Query: 181 acacactttataaaatgtccccgtaaacagtttcctgttgtttattcctgctgggtgtgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acacactttataaaatgtccccgtaaacagtttcctgttgtttattcctgctgggtgtgc 440

                                                                       
Query: 241 tgagatagggtggaccccgtcaccggacagatggggtagcagacactgagcttggattta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgagatagggtggaccccgtcaccggacagatggggtagcagacactgagcttggattta 500

                                                                       
Query: 301 taacccagttgtctgctgatctgcagttactttgataaacccttcctggaaatccaaagc 360
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 501 taacccagttgtctgctgatctgcagttactttgataaagccttcctggaaatccaaagc 560

                                                                       
Query: 361 caggactggcagaggtgggctgtgctcagtggtggtgtgggactcaacagcacatgcggc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caggactggcagaggtgggctgtgctcagtggtggtgtgggactcaacagcacatgcggc 620

                                                                       
Query: 421 tttgtgaagccatttagaaaccagcagcagtatattgatgcccacagtggctgtccactc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttgtgaagccatttagaaaccagcagcagtatattgatgcccacagtggctgtccactc 680

                           
Query: 481 ccacgagcatgctcgt 496
           ||||||||||||||||
Sbjct: 681 ccacgagcatgctcgt 696


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space:   430596
Effective search space used:   430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)