BAC Information

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BAC

Clone NameMSMg01-114E22
Chromosome8 (Build37)
Map Location 116,525,051 - 116,525,321
singlet/doubletsinglet
Overlap genenone
Upstream geneMon1b, 4930481F22Rik, Adamts18
Downstream geneNudt7, AI427515, Clec3a, Wwox
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-114E22.T7 (MSMg01no114_e22.b1)MSMg01-114E22.TJ (MSMg01no114_e22.g1)
ACCAG326221AG326222
length727745
length of high quality
(start - end)
537 (39 - 575)526 (75 - 600)
definitionCHROMAT_FILE: MSMg01no114_e22.b1 PHD_FILE: MSMg01no114_e22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:58 2005CHROMAT_FILE: MSMg01no114_e22.g1 PHD_FILE: MSMg01no114_e22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:58 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAT
GGGCACTGGCAGAAATTTCTGAACAGAACACAAATGTCTCAGGCTCTAAG
GTCAACTGATAAATGGGATTTCATGAAACTAAAAAGCTTCTGTAAGGCAA
AGGGTACTGTCACTAGGACAAACCAGCAACTTATAAATTGGGAAAAACAT
CTTCACTAATCCTACATGCAATAGAGAGCTAATATCCAAAATATATAAAG
AATTTAACCTTCAAAAAACTAAATACCACAAGTAAAAATGATCTACGGTA
CTAATCAGAAAATTCTCAGCAGAAAAATTTCTCCTTTTTTTTACACAATT
TTTTATTAGTTATTTTCTTCATTTACATTTCAAATGCTATCCCCAAAGCC
CCTGATACACTCCCTGCACCCTGCTCCCCAACCCACAACTCCCACTTCCT
GGGTCATATAATCTATGCAAGACCAAGGGCCTCTCCACCCAATGATGGCC
TACTAGGCCATCTTCTGCTACATATGCAGCTAGAGACATGAGCTCTGGGG
GTACTGGTTAGTTCATATTGTTGTTCCTCCTATAGGGTTGCAGACCCCTT
CAGCTACTTGGGTACTTTCTCTAGCTCCTCCATTGGGGGCCCTGTGTTCC
ATCCAAAAGATGACTGTGAGCCTACCCTTGTGTGTTTGCCAGACACTGGC
ATAGCCTCACATGACAGATATTAGGAG
ATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACTACTTTTACCAAAGTAATTAAAGA
AAATAGTTATTCTAAGTATTTACATGTAAACACTTTGTAAGCATCAGTGA
TTCTAATGTTTGGCTTTTTTTAATATGGTTTAATTAGTTTGAATTGTAAC
AGTCACTTCTTTGTTTCACATTAAGAAGCTTGATTTGGGTATCAAAACCT
TTCACAAATATTAAAATATCTAAGTTTTTAAGGTTTCATGTACTGTGAAA
TAAGTACAAATTTCTAATTCTTTTTTTTTCAGTTTTATCTTTTTTAATTC
ATTTCTTGCGTTTTCATGGATAAATAAAAGCCACACATGAGGTGTACATA
TATTGGTAAAATTAAGTGTACAGCCATGAACTATCCACTGTTTTTTTATT
ATGTTTTAGGACAGGAACTGAGGACTGAAGACATGGCTCAGCAGTTAAGA
GCAATTGCTGTACTTCCAGAGAAACTATGTTTAGTTCCCAGTATCTATAT
TTGACAGCTCACAAAGCTCTAAAAATCCATACCCCAAAGGGTCTGACAAA
CCCACAGGCCATTCTGGTGGAAGCAATTCCTTAATTGAGATTCCCCAGTT
CCCAGATATATCTAGGTTGGTGTTGAGTTTTTAAGAACTAACTATGACAC
ATGAGGCTCTGGATTCAATTCCTAACATATTCTAAAGAAAACATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no114_e22.g1 MSMg01no114_e22.g1 CHROMAT_FILE:
MSMg01no114_e22.g1 PHD_FILE: MSMg01no114_e22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:58 2005
         (526 letters)



>mm_chr8_116524599_116525524
          Length = 926

 Score =  449 bits (232), Expect = e-130
 Identities = 262/272 (96%), Gaps = 1/272 (0%)
 Strand = Plus / Plus

                                                                       
Query: 253 tttcagttttatcttttttaattcatttcttgcgttttcatggataaataaaagccacac 312
           |||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct: 453 tttcagatttatctttttttattcatttcttgcgtttacatggataaataaaagccacac 512

                                                                       
Query: 313 atgaggtgtacatatattggtaaaattaagtgtacagccatgaactatccactgtttttt 372
           ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 513 atgaggtatacacatattggtaaaattaagtgtacagccatgaactatccactgttcttt 572

                                                                       
Query: 373 tattatgttttaggacaggaactgaggactgaagacatggctcagcagttaagagcaatt 432
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 573 tattatgttttaggacaggaactgagggctgaagacatggctcagcagttaagagcaatt 632

                                                                       
Query: 433 gctgtacttccagagaaactatgtttagttcccagtatctatatttgacagctcacaaag 492
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 gctgtacttccagagaaactatgtttagttcccagtatctatatttgacagctcacaaag 692

                                           
Query: 493 ctctaaaaatccataccccaaagggtctgaca 524
           ||||||| |||||||||| ||||| |||||||
Sbjct: 693 ctctaaagatccataccc-aaaggatctgaca 723


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 926
Length adjustment: 10
Effective length of query: 516
Effective length of database: 916
Effective search space:   472656
Effective search space used:   472656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)