BAC Information

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BAC

Clone NameMSMg01-114F03
Chromosome8 (Build37)
Map Location 93,095,329 - 93,095,657
singlet/doubletsinglet
Overlap genenone
Upstream geneTox3
Downstream geneLOC100041133, Chd9, LOC100041156, EG626231, Rbl2, Aktip, LOC667162, LOC100041222, Rpgrip1l, AJ237917
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-114F03.T7 (MSMg01no114_f03.b1)MSMg01-114F03.TJ (MSMg01no114_f03.g1)
ACCAG326229AG326230
length734711
length of high quality
(start - end)
83 (70 - 152)382 (74 - 455)
definitionCHROMAT_FILE: MSMg01no114_f03.b1 PHD_FILE: MSMg01no114_f03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:59 2005CHROMAT_FILE: MSMg01no114_f03.g1 PHD_FILE: MSMg01no114_f03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTCAAGAGAATCCGC
GGAATTCTAGAGCCTGCCGTTTCTTTCAGAATGAAGGATGGATGAATAGA
CCTTCCACTCTGCCAGAAAACGCTACAGAAAACTGGGAGTGTGTGTGTCG
GGGGGGGCGGGGGGGGTGCACCCAACCACTTTACCACCCACTGTTGCCCA
AAAACACTACCCGCCCCCTACCAGTACTCCCTTTGTTTTATTCACCCCCC
ACCTTTTTTTCCCCCAAATGCCCTATACTTCTCCTCCCCAACCCTGCACA
ATCATTACCATATATGCCAAACATCTTTTTTCCCAACACTCTCCTTCCAT
TTTTTATCACAAATCTCTTTCTCCTTTTCTACCCCTGAATATATACTTAC
CTTTTTCTAAATTTTATTCCCACCCCCATCATTATCCACCCCCTTAATCT
CCTCTCCATACCCAAAACCACCCACTATCAAAAAAACCTACATTACCACC
CCAATAACATATATACCCTAACTCAATCAATCCCCCACCCCCCCTTCATT
ACAAAATAACCCCCCATCCCTTTCCTCTTCCTTTTCTCCAATCTCCCCCT
TTTCCACCCCCAAACTCTTTCACTCAATTAAAAAACCCCATCCTATAAAC
CATCCCCTTTCTTTCCCCAACCACTCCCACTTCTTACCCCCTTTCTCCCC
CCCTCCTTCCATTATTTTATATCCTTCTATCATT
ATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCACATATTAAGGAATTCT
AAATTGTGTCTGAAGGAGATTACAAAAAATGAACCTAAATCCAATCTTCG
CTCTATATAAACATTTGATATAAAGCAATCTAATTTAAATATTGTGTTTT
AGATTGAAAATACATTTTGTACAATCTATTCTCATCACAGTTTCCCTCCT
GCAACTCCTCCCAGATCAGATCCCCTCCACCTCTGTACCCACCCAACTCT
ATACCTTCTCTCTATTTAGGAAACAAGTAGACAAAACAGCATAAAAAAAC
TATGAGAAAGGAACAGGAAACATAAACATACACATATACGCACACACACA
CACACACACACACACACACACAAAACAAAACACAAACTGGAAACCATAAT
ATACAAGCAAGAAGACCAGTAAGACAAAACAAAACAAACAAATGAACAAA
TAAATGAACAAACCAACTAACCACCTAAAAACCAAACAAAAAACCTACCA
AACACCCTTAAATTCATTTGTGTTGGCAGTGCACTGCTGGGCTTCCTTTT
ATCCTTAAGTATTGCTAGTATCCCCAGCGGGACCCCACTGCAGAAAACAC
TTTTTCCTTTGCAAGTGGTTGTCCATTGCAAAGAGCGTCCTGGTCCGAGA
TGGCAGTCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no114_f03.g1 MSMg01no114_f03.g1 CHROMAT_FILE:
MSMg01no114_f03.g1 PHD_FILE: MSMg01no114_f03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:59 2005
         (382 letters)



>mm_chr8_93095329_93096110
          Length = 782

 Score =  636 bits (329), Expect = 0.0
 Identities = 329/329 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttgtttagcacatattaaggaattctaaattgtgtctgaaggagattacaaaaaatgaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 tttgtttagcacatattaaggaattctaaattgtgtctgaaggagattacaaaaaatgaa 270

                                                                       
Query: 61  cctaaatccaatcttcgctctatataaacatttgatataaagcaatctaatttaaatatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 cctaaatccaatcttcgctctatataaacatttgatataaagcaatctaatttaaatatt 210

                                                                       
Query: 121 gtgttttagattgaaaatacattttgtacaatctattctcatcacagtttccctcctgca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 gtgttttagattgaaaatacattttgtacaatctattctcatcacagtttccctcctgca 150

                                                                       
Query: 181 actcctcccagatcagatcccctccacctctgtacccacccaactctataccttctctct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 actcctcccagatcagatcccctccacctctgtacccacccaactctataccttctctct 90

                                                                       
Query: 241 atttaggaaacaagtagacaaaacagcataaaaaaactatgagaaaggaacaggaaacat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89  atttaggaaacaagtagacaaaacagcataaaaaaactatgagaaaggaacaggaaacat 30

                                        
Query: 301 aaacatacacatatacgcacacacacaca 329
           |||||||||||||||||||||||||||||
Sbjct: 29  aaacatacacatatacgcacacacacaca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 782
Length adjustment: 9
Effective length of query: 373
Effective length of database: 773
Effective search space:   288329
Effective search space used:   288329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)