BAC Information

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BAC

Clone NameMSMg01-114J11
Chromosome8 (Build37)
Map Location 18,328,149 - 18,328,508
singlet/doubletsinglet
Overlap geneLOC100040466
Upstream geneCsmd1, LOC665638
Downstream geneMcph1, Angpt2, Agpat5, LOC100040486, Xkr5, Defb40, Defb37, Defb38, Defb39, Defb12, Defb34, EG546038, Spag11, Defb14, Defb4, EG654452, Defb6, EG574081, Defb5, Defb3, Defb54-ps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-114J11.T7 (MSMg01no114_j11.b1)MSMg01-114J11.TJ (MSMg01no114_j11.g1)
ACCAG326433AG326434
length689733
length of high quality
(start - end)
286 (83 - 368)360 (76 - 435)
definitionCHROMAT_FILE: MSMg01no114_j11.b1 PHD_FILE: MSMg01no114_j11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:20:18 2005CHROMAT_FILE: MSMg01no114_j11.g1 PHD_FILE: MSMg01no114_j11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:20:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTAAAATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCAAGGCCTCCCCCTAAACATGATAAAAGCAATCTACAGCA
AACCAGTAGCCAACATCAAAGTAAATGCAGAGAAGCTGGAAGCAATCCCA
CTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAA
CATAGTACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCA
AGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGAT
GATATGATAGTATATATAAGTGACCCTAAAAATTCCACCAGAGAACTCCT
AAACCTGATAAACAGTTTCGGTGAAGTAGCTGGACATAAAATTAACTCAA
ACAAGTCAGTGGCCTTTCTCTACGCCAAGAATAAACAGGCTGAGAAAGAA
GTTAGGGAAACGACACCCTTCTCAATAGTCACAAATAATATAAAATATCT
CGGCGTGACTCTAACTAAAGAAGTGAAAGATCTGCATGATAAAAACTTCG
GGTCTCTCGAGAAAGAGGTTACAGAAGATGTCGGAGGATGAAAAGATCTC
CCATGCTCATGGATTGGTAAGAGCAACATTGTAAAAATGGCTATCTTGCC
AAAAGAAATCTAAGGGGTCCATGAAAGGCCCATCAAAAG
TACTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTGCCTAAGAGGGTTTTGCCTATC
TAATATCTTGAGTTTTGGATTAGGAGCTTTGCTGGATTTCCCCATCCCTG
AAGGAAGAGAGGTGTGTTATGGTATAGTGAGGAGTGGGCTGGACCCTGTT
CATCAAGCTGGGTCCAGTGACACTTATGGGGGTGACACTGGGGATCAGTC
AATCTTCTTGAATGGAGCTCTGTCAATACCTGGGGTCACTTGCAAGTCCT
CCTGGCAGACCTCGTATTCAGATGGCCTAGACTGCAAGAGTGCATTTCAG
GCTTTCTGATGCTTATGTTCTTGTTCCTGCTGTCAAGCAATGGAACTAGT
CAGCCTCATTGTCTGCAGTGGAGGATCTGTCTCAGGCTCTTCTTAGATAA
ACACATAAGATTTATTGATAGGAACATCCAAGTGCGTGTGTGCGTGTGTG
TGTGTGTGTGTGTCTGTGCGTTACTGCCCCCTTTATGCCCTTGTTCCCCG
TAGTTATGCGAGCGCCAGCCAGTGCCTCACCTGCACCATTTTCCCCTGCC
CACTATGATTACCCCCTTTGCCCCCTTGTTTCCCCCTTCCCTTTGACTTC
CCCGTTTACGGAGAAACATTCGCAACTTATTGTTTGTTCGTAAACATTCT
TTCATTCCCCATGTCCTTTTACCCTTGTCCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no114_j11.g1 MSMg01no114_j11.g1 CHROMAT_FILE:
MSMg01no114_j11.g1 PHD_FILE: MSMg01no114_j11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:18 2005
         (360 letters)



>mm_chr8_18327949_18328708
          Length = 760

 Score =  696 bits (360), Expect = 0.0
 Identities = 360/360 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttgcctaagagggttttgcctatctaatatcttgagttttggattaggagctttgctgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tttgcctaagagggttttgcctatctaatatcttgagttttggattaggagctttgctgg 501

                                                                       
Query: 61  atttccccatccctgaaggaagagaggtgtgttatggtatagtgaggagtgggctggacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 atttccccatccctgaaggaagagaggtgtgttatggtatagtgaggagtgggctggacc 441

                                                                       
Query: 121 ctgttcatcaagctgggtccagtgacacttatgggggtgacactggggatcagtcaatct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ctgttcatcaagctgggtccagtgacacttatgggggtgacactggggatcagtcaatct 381

                                                                       
Query: 181 tcttgaatggagctctgtcaatacctggggtcacttgcaagtcctcctggcagacctcgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tcttgaatggagctctgtcaatacctggggtcacttgcaagtcctcctggcagacctcgt 321

                                                                       
Query: 241 attcagatggcctagactgcaagagtgcatttcaggctttctgatgcttatgttcttgtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 attcagatggcctagactgcaagagtgcatttcaggctttctgatgcttatgttcttgtt 261

                                                                       
Query: 301 cctgctgtcaagcaatggaactagtcagcctcattgtctgcagtggaggatctgtctcag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 cctgctgtcaagcaatggaactagtcagcctcattgtctgcagtggaggatctgtctcag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 360
Length of database: 760
Length adjustment: 9
Effective length of query: 351
Effective length of database: 751
Effective search space:   263601
Effective search space used:   263601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)