Query= MSMg01no114_n08.b1 MSMg01no114_n08.b1 CHROMAT_FILE:
MSMg01no114_n08.b1 PHD_FILE: MSMg01no114_n08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:37 2005
(571 letters)
>mm_chr8_9378196_9379166
Length = 971
Score = 1002 bits (518), Expect = 0.0
Identities = 558/574 (97%), Gaps = 7/574 (1%)
Strand = Plus / Plus
Query: 4 ggaattcaagtgcatttgctggaggtcctggcagacttcaggctctcgagttaggacatc 63
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct: 204 ggaattcaagtgcatttgttggaggtcctggcagacttcaggctctcgagttaggacacc 263
Query: 64 taggttaagcctgagaacctgtaagttccaggctggcaccttgtctagaggcctcatttg 123
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 taggttaagcctgggaacctgtaagttccaggctggcaccttgtctagaggcctcatttg 323
Query: 124 atgaactatgctgtagaaggtctcaggctagtcctaggcctttattcttccattgttgat 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 atgaactatgctgtagaaggtctcaggctagtcctaggcctttattcttccattgttgat 383
Query: 184 gatggaatttaaatgggatttgttgctagtgcttaacactgatgggtatcaacaaccata 243
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gttggaatttaaatgggatttgttgctagtgcttaacactgatgggtatcaacaaccata 443
Query: 244 ccatcatcagatagttcaaattaaaagcctgtcagttccagttgttttattcccaacaga 303
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 c-atcatcagatagttcaaattaaaagcctgtcagttccagttgttttattcccaacaga 502
Query: 304 cataaaaaataaaagtaaagtcttaggaaattacttctgtaaatagtgaaacattt---- 359
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 cttaaaaaataaaagtaaagtcttaggaaattacttctgtaaatagtgaaacatttattt 562
Query: 360 ttttttcaagttgccaattgaaccattaatttttaatttcagttggaggacaattgagaa 419
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ttttttcaagctgccaattgaaccattaatttttaatttcagttggaggacaattgagaa 622
Query: 420 aatgttttctctgttggttagtcatcatagtcaacttgacagtttaggataaccgaggaa 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 623 aatgttttctctgttggttagtcatcatagtcaacttgacagtttaggataacctaggaa 682
Query: 480 acaatcatggtacacatgtagctgtgtctatgaaggagtcttcagaggggatcaactagg 539
||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 683 acaatcatggtactcatgtagctgtgtctatgaaggagtcttcagaggggatccactagg 742
Query: 540 ct--aaagacccatcacaaaggagcagcgccatc 571
|| ||||||||||||||||||||||||||||||
Sbjct: 743 cttgaaagacccatcacaaaggagcagcgccatc 776
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 971
Length adjustment: 10
Effective length of query: 561
Effective length of database: 961
Effective search space: 539121
Effective search space used: 539121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no114_n08.g1 MSMg01no114_n08.g1 CHROMAT_FILE:
MSMg01no114_n08.g1 PHD_FILE: MSMg01no114_n08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:37 2005
(401 letters)
>mm_chr8_9557978_9558778
Length = 801
Score = 497 bits (257), Expect = e-145
Identities = 260/261 (99%)
Strand = Plus / Minus
Query: 1 agtgggcactggtttcactggattcagtcctactttctgcctggtcatttgtagatcttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 agtgggcactggtttcactggattcagtcctactttctgcctggtcatttgtagatcttg 402
Query: 61 gagtctgtgggacaaatagaaaggcagaaaataaaacttctttcctgtgttgtagctcat 120
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 gagtctgtgggacgaatagaaaggcagaaaataaaacttctttcctgtgttgtagctcat 342
Query: 121 gtagaggtacttgtactgagtgcagagagggtacactactgtcctatagcagacgcggtc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 gtagaggtacttgtactgagtgcagagagggtacactactgtcctatagcagacgcggtc 282
Query: 181 agtggattctaggagagatgggactttacgagggagcaggtaggaagttgaggcttatgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 agtggattctaggagagatgggactttacgagggagcaggtaggaagttgaggcttatgc 222
Query: 241 aaaaaggcacagcagcttctt 261
|||||||||||||||||||||
Sbjct: 221 aaaaaggcacagcagcttctt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 401
Length of database: 801
Length adjustment: 9
Effective length of query: 392
Effective length of database: 792
Effective search space: 310464
Effective search space used: 310464
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
