BAC Information

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BAC

Clone NameMSMg01-114N19
Chromosome8 (Build37)
Map Location 65,436,770 - 65,436,889
singlet/doubletsinglet
Overlap geneSpock3
Upstream geneBC013672, Anxa10, LOC100040775, LOC384830, LOC100040804, LOC665267
Downstream geneLOC384831, EG244495
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-114N19.T7 (MSMg01no114_n19.b1)MSMg01-114N19.TJ (MSMg01no114_n19.g1)
ACCAG326639AG326640
length734734
length of high quality
(start - end)
---120 (359 - 478)
definitionCHROMAT_FILE: MSMg01no114_n19.b1 PHD_FILE: MSMg01no114_n19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:20:39 2005CHROMAT_FILE: MSMg01no114_n19.g1 PHD_FILE: MSMg01no114_n19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:20:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
CACCTGATGAATACTGAATGGCTGAGAAGCACCTGAAAAAATGCTCAGCA
TCCTTAATCATCACAGAAATGCCAATCAAAACAACCCTGACAGTCCATCT
CACACCAGGCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCCGATGCT
GGCCAGGAGGTGGAGAAACAGTAACACTCCTCCATTGTTGGTCGGACTGC
AAGCTTGGACAACCACTCTGGAAATCAGTCAGGCAGATCCTCAGAAAATT
GGACATAGGACTACCGGACCATCCAGCAACACCTTTCCTGGGCATATATC
CGGAAGATGTCCCAACCGGTAAGAAGGAAACATGCTCCACTATTTTCATA
GCAACCTTATCCATCATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTC
AACAGAGGAATGGATACCAAAAATGTGGTACATTTACCCAATGCAGTACT
ACTCAGCTATTAGAGGAATGAATTTATGAAATTCCTACGTAAATGGATGG
ACCTGGACGGCCTCATCCTGAGTGAGGTACCACAATCACGAACGAACTTA
ACCGCCATATACCCACTGACCAGTGGACATTACCCCCCGAAACTTACCCA
TCCCGCCAGATATACCCATCCCCCCCCGCCCATCCATTGAAACCTGAACA
ATATTGAAGCACCCCCTTGTGGCACTCTTTTTGC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTGTTAATATGGGTCTAGTATTCA
TGTTGTTTAAATCAAAAAGAGATTTAATCTGTAAAAAATCAATAAACTTT
TCACAGGACTCACTAGAGACACATGGTTATTTCAGGGCCAATAAATCACG
GAGGCAGTGAGGACTCATTCTTTTCAGTACCTAACTCCAGTCACTTGAAT
CCTAGTTGGGCCACAGGTCTGTTAACACCTCCATATCCCTGTTCTTCCCT
TGGACTCCACTATCACTCTGCACTTGCCAGTAGGGATTTAGGGTTGATGC
TTCTCAGATCCAGTATCACAGCATAAAGGAAACAAGCTAGAGAGTATTTC
ATGACTTACCAAATTCTGGAATTGGCATAATGTGAGTCTCTCTGTCGAGA
AATCTTCTTTGCTGGTGACCATTTAGTTAATATCTGTTCTGAACTCATCC
TTGTAGACTTATTGTGAAGCANAAATTACATTTTACTCTCTATTAACTTC
TAGTCATTTCAAAATTATGTATATGAGATATTATTTCTCCTTTGCATATA
ATTATTTTGAATGAATGAAGATATTGTATATATGTGTTTACATTGCAATG
TATTTTTATATTAATATGTACATATATATGCAGCATTTTATGTGTACATA
TCTTTGAGAAGGTACAGACAACATATGAGAATCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no114_n19.g1 MSMg01no114_n19.g1 CHROMAT_FILE:
MSMg01no114_n19.g1 PHD_FILE: MSMg01no114_n19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:39 2005
         (120 letters)



>mm_chr8_65436570_65437089
          Length = 520

 Score =  203 bits (105), Expect = 3e-57
 Identities = 117/121 (96%), Gaps = 2/121 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccagtatcacagcataaaggaaacaagctagagagtatttcatg-acttaccaaattct 59
           |||||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 201 tccagtatcagagcataaaggaaacaagctagagagtatttc-tggacttaccaaattct 259

                                                                       
Query: 60  ggaattggcataatgtgagtctctctgtcgagaaatcttctttgctggtgaccatttagt 119
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 260 ggaattggcataatgtgagtctctctgttgagaaatcttctttgctggtgaccatttagt 319

            
Query: 120 t 120
           |
Sbjct: 320 t 320


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 120
Length of database: 520
Length adjustment: 8
Effective length of query: 112
Effective length of database: 512
Effective search space:    57344
Effective search space used:    57344
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)