Query= MSMg01no114_o22.b1 MSMg01no114_o22.b1 CHROMAT_FILE:
MSMg01no114_o22.b1 PHD_FILE: MSMg01no114_o22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:44 2005
(593 letters)
>mm_chr8_47912502_47913493
Length = 992
Score = 1046 bits (541), Expect = 0.0
Identities = 577/589 (97%), Gaps = 1/589 (0%)
Strand = Plus / Minus
Query: 5 gaattcatttttgttttaaacaaaacaaaaaagcccctccccccaaaaaaaccctcctaa 64
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 792 gaattcatttttgttttaaacaaaacaaaaaagcccctcccccc-aaaaaaccctcctaa 734
Query: 65 cgtcccaaaaagaaaatgtcgatatggtggcagatgctttcactagcataatgaattaat 124
| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 733 cttcccaaaaagaaaatgtcgatgtggtggcagatgctttcactagcataatgaattaat 674
Query: 125 tgtccctatagtgtgtgcatcgatcacagcatcctactgcatcctttataaattcatagt 184
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 tgtccctatggtgtgtgcatcgatcacagcatcctactgcatcctttataaattcatagt 614
Query: 185 gatcacttgccaattaaaagcaggtaagttagcgttacaaatgatcacagaaagccactg 244
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct: 613 gatcacttgccaattaaaagcaggtaagttagcattacaaatgatcacagaaagccacgg 554
Query: 245 tacaacgctagctgtggtttggcagactgaggcttacttcacctgataaatgcatagaaa 304
||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct: 553 tacaacgctagctgtggtttggcagactgaggcttacttcacccgataaatgcagggaaa 494
Query: 305 ctccagaaccatccaacacattcaaagcgaggtgtgtcttaagaaactgagtctggagtt 364
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 493 ctccagaaccatccaacacattcaaagcgaggtgtgtcttaagaaaccgagtctggagtt 434
Query: 365 tgggggagaagtatttctaaggactccaagaggcatatgtaaattctccaggcctgccta 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tgggggagaagtatttctaaggactccaagaggcatatgtaaattctccaggcctgccta 374
Query: 425 ctaagaaagccatctggtaccccataggaagagacagaaatggatgctacttcacagggg 484
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ctaagaaagctacctggtaccccataggaagagacagaaatggatgctacttcacagggg 314
Query: 485 caggaggcaggaaagaggggatacctccaaaagtggggtgaatctccaaaatctaggggg 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 caggaggcaggaaagaggggatacctccaaaagtggggtgaatctccaaaatctaggggg 254
Query: 545 atgatggatacagacagtttctggctgtggcctcctgtcagtcagtgtg 593
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 atgatggatacagacagtttctggctgtggcctcctgtcagtcagtgtg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 992
Length adjustment: 10
Effective length of query: 583
Effective length of database: 982
Effective search space: 572506
Effective search space used: 572506
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no114_o22.g1 MSMg01no114_o22.g1 CHROMAT_FILE:
MSMg01no114_o22.g1 PHD_FILE: MSMg01no114_o22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:45 2005
(570 letters)
>mm_chr8_47792303_47793275
Length = 973
Score = 1093 bits (565), Expect = 0.0
Identities = 570/573 (99%), Gaps = 3/573 (0%)
Strand = Plus / Plus
Query: 1 cttcaaaactctaaagaatggcccaacaatctgatgttaaaaaga---gataaaggtatt 57
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 cttcaaaactctaaagaatggcccaacaatctgatgttaaaaagaagagataaaggtatt 260
Query: 58 attggggaaaactgtatagatctcatgaggacagatcttactaatgagaaaatacaaccc 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attggggaaaactgtatagatctcatgaggacagatcttactaatgagaaaatacaaccc 320
Query: 118 atcaacccgtcaaaggagcagtgtacaatgagggtgtgggctttatctggggaaaagaag 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atcaacccgtcaaaggagcagtgtacaatgagggtgtgggctttatctggggaaaagaag 380
Query: 178 atgcgctggtcctttaaaatgatctttagggcacaccaacagatgacaagaaacaacgtc 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgcgctggtcctttaaaatgatctttagggcacaccaacagatgacaagaaacaacgtc 440
Query: 238 atgattatcttgagaggtgtggaaaagatatttgacaaacgttctcatcattttgtaatg 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgattatcttgagaggtgtggaaaagatatttgacaaacgttctcatcattttgtaatg 500
Query: 298 taaattggcggtagacaataatgtccataaagttatatttttttaaactctataagcaac 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taaattggcggtagacaataatgtccataaagttatatttttttaaactctataagcaac 560
Query: 358 cttcaggtaactacagacataattttgaaagattcaatgtgacatttctctctctgtgac 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cttcaggtaactacagacataattttgaaagattcaatgtgacatttctctctctgtgac 620
Query: 418 tctctctctctttgtgtctctctgtgtctctgtctgtctctgtgtctctgtctttctctg 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tctctctctctttgtgtctctctgtgtctctgtctgtctctgtgtctctgtctttctctg 680
Query: 478 tctctctgtgtctctgtctgtctgtctctgtgtctctgtctgtctttctctgtctctctg 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tctctctgtgtctctgtctgtctgtctctgtgtctctgtctgtctttctctgtctctctg 740
Query: 538 tgactctgtctctgtctctctgtctctctgtct 570
|||||||||||||||||||||||||||||||||
Sbjct: 741 tgactctgtctctgtctctctgtctctctgtct 773
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 58
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 973
Length adjustment: 10
Effective length of query: 560
Effective length of database: 963
Effective search space: 539280
Effective search space used: 539280
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
