BAC Information

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BAC

Clone NameMSMg01-116B01
Chromosome8 (Build37)
Map Location 120,119,697 - 120,120,053
singlet/doubletsinglet
Overlap genePlcg2
Upstream geneCdyl2, LOC100043053, 2310061C15Rik, 2610510J17Rik, BC060631, 1700030J22Rik, Gcsh, Pkd1l2, Bcmo1, Gan, 4933407C03Rik
Downstream gene4632417N05Rik, Hsd17b2, Mphosph6, Cdh13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-116B01.T7 (MSMg01no116_b01.b1)MSMg01-116B01.TJ (MSMg01no116_b01.g1)
ACCAG327538AG327539
length756701
length of high quality
(start - end)
---574 (86 - 659)
definitionCHROMAT_FILE: MSMg01no116_b01.b1 PHD_FILE: MSMg01no116_b01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:22:12 2005CHROMAT_FILE: MSMg01no116_b01.g1 PHD_FILE: MSMg01no116_b01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:22:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTCCTTTTTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGCGGTATTCTAGTATATTCCGGTTATGTAGGGAGACCCTAGCG
AGAGACGGAGGGAGTAACAGATAGAGACGGAGCAAGGGACAGGGAGGGAA
AGGGAGTTAGAGCCTTGTTTTTTTCTTTCTTTTCTCTTTTTTCTTTTTTC
TTTTCTTCTCTCCTTCCTTCTTTTCTTCTTCTTTCGTCTTTTCTTTTCTT
TCTCTCTTCGTCTTTCTCTTCTCTTTGTCTTTTTCCTTTTCCTTTTTTTT
TTCTTTTCTTTCTTTTTTTTTTCCCTCTTCTTTTCTTTTTCTTTTTTTTC
TCACTTCTTCTCTTTCCCTTTTACTTTCCCCTCCTCCCCTCCCTTTCTCT
TTTTTTTCTTTTCCTTTCTTTCTTTCTTTTTCTCTCCTTCTTTCTTTCTT
TCTCTCTTCGCCCTTTCCTCTCCTTTTTCTTTTCGTTTCTTTTCTTTTTT
TCGTCTTTCTTTTCTTTTTTCTTCTTTTCCTTTCTTTTCTCCTTTCTTTC
TCTTTCTTCCCTTTTCTCTTTTTTTTTTTCTCTCGTTTCCGTCTTTCTCT
CCCTTCCTCTTTTTCTCTCTTTTTCCCTTTTCCCTTTTGTCTTTCTCTTT
TCCCTTTTTTCTTTTCTTCTCTCCTTTCTCCTTCTTTTTTCTCCTTCTTT
CTCTTTTTCCTTTTTTTTCCCTTCTCCTCTTTTCTCTTTTCTCTTTCTCT
CCTCCT
TCTTTNNNTTACGATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTCCTCCTATGGAA
CACGAGACACTGGGGTCTTTTCAGTTCAGATCTGAAAGAACCCATATGTG
ATGCTCAACACCCAGCTCTTCTTTCAACCTGACTGAGGTGCCATACTATG
TATGACCCACAAGCTAAACCTGCTCCCTGGTTTGTTTGTTTGGTTTTTTT
AAATAAAGTTTTATTGAAATATGACCACTGTTCATTTGTGTCTATGCTGT
GGTCATTTTCTCTCATGGATGGTGGGGTTACATAGCTGCAACAGGGACTA
TTCAGCCTGTGAAGCCGAAAGTGTTTGCTCCGTGGGCCCTTCCACAAAGG
GCTTTCCAGTCCTTGCATAAAACTCCAATCAGTCCTCAGGTTCTTGAATC
TTGCCTCCAGTGGCCCAGAGTTACAATGGTTGGTGTTTGTTTTGTTTTGT
TTTGTTTTGTTTCAAAAAGGATGATAAGTTGTTTTGGTCTTTTTTCCTTT
TTCATCTGTTTGAAACAAGAGGCAGATAAGATTCCAAACAGAACAGACAA
CTGATCCTTCAGCCTTATTGATTTAGAAAAATAAGAAAAATCGGGTCTGA
TCCTAACTTTAGAGACAAGAGTATCTGGGCTGGGGAGGTGACTCTGTTGT
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no116_b01.g1 MSMg01no116_b01.g1 CHROMAT_FILE:
MSMg01no116_b01.g1 PHD_FILE: MSMg01no116_b01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:12 2005
         (574 letters)



>mm_chr8_120119697_120120670
          Length = 974

 Score =  690 bits (357), Expect = 0.0
 Identities = 357/357 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtcctcctatggaacacgagacactggggtcttttcagttcagatctgaaagaacccat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 agtcctcctatggaacacgagacactggggtcttttcagttcagatctgaaagaacccat 298

                                                                       
Query: 61  atgtgatgctcaacacccagctcttctttcaacctgactgaggtgccatactatgtatga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 atgtgatgctcaacacccagctcttctttcaacctgactgaggtgccatactatgtatga 238

                                                                       
Query: 121 cccacaagctaaacctgctccctggtttgtttgtttggtttttttaaataaagttttatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 cccacaagctaaacctgctccctggtttgtttgtttggtttttttaaataaagttttatt 178

                                                                       
Query: 181 gaaatatgaccactgttcatttgtgtctatgctgtggtcattttctctcatggatggtgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 gaaatatgaccactgttcatttgtgtctatgctgtggtcattttctctcatggatggtgg 118

                                                                       
Query: 241 ggttacatagctgcaacagggactattcagcctgtgaagccgaaagtgtttgctccgtgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117 ggttacatagctgcaacagggactattcagcctgtgaagccgaaagtgtttgctccgtgg 58

                                                                    
Query: 301 gcccttccacaaagggctttccagtccttgcataaaactccaatcagtcctcaggtt 357
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57  gcccttccacaaagggctttccagtccttgcataaaactccaatcagtcctcaggtt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 974
Length adjustment: 10
Effective length of query: 564
Effective length of database: 964
Effective search space:   543696
Effective search space used:   543696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)