Query= MSMg01no116_d01.b1 MSMg01no116_d01.b1 CHROMAT_FILE:
MSMg01no116_d01.b1 PHD_FILE: MSMg01no116_d01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:22 2005
(474 letters)
>mm_chr8_108773971_108774842
Length = 872
Score = 847 bits (438), Expect = 0.0
Identities = 465/474 (98%), Gaps = 2/474 (0%)
Strand = Plus / Minus
Query: 1 gtgggtaaccatagtaaccaaactcctatttgcagtttggctcagggtctgcaggtagaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 gtgggtaaccatagtaaccaaactcctatttgcagtttggctcagggtctgcaggtagaa 613
Query: 61 ggtgagcaaggctcaccccagttctccttcacccacacgtgcccagaggctgtgggaccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 ggtgagcaaggctcaccccagttctccttcacccacacgtgcccagaggctgtgggaccc 553
Query: 121 atcccccacacccccaacgcaaaagaaggacaggactgaggcatacgtcctggcccagga 180
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 552 atcccccacacccccaacgcaaaagaaggacaggactgaagcatacgtcctggcccagga 493
Query: 181 gttagagagtctccaggctgtcgtgtccttcacaattgtgtggctgctaagccccctaca 240
|||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 492 gtta-agagtctccaggctgt-ttgtccttcacaattgtgtggctgctaagccccctaca 435
Query: 241 gtcttcaccccacaactcccagcagctcccactcaccttgtcagctctattgtgcccttg 300
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 434 gtcttcaccccacaactcccagcagctcccactcaccttgtcagctccattgtgcccttg 375
Query: 301 gattgcataggctgttgggggatgggctgctggaaatcaaaagtcaggatctcttgaggc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 gattgcataggctgttgggggatgggctgctggaaatcaaaagtcaggatctcttgaggc 315
Query: 361 ttggagaggcttctgcacgggtattcccacagtgggtgtggctctgcctctctgctgtct 420
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct: 314 ttggagaggcttctgcaggggtattcccacagtgggtgtggctctgcctctctgctctct 255
Query: 421 cggaaatccagggagtgctagaggagaagagaacatggggtctgtggagacgaa 474
||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct: 254 cggaaatccagggagtgctagaggagaagagaacacggggtctgtagagacgaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 872
Length adjustment: 10
Effective length of query: 464
Effective length of database: 862
Effective search space: 399968
Effective search space used: 399968
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no116_d01.g1 MSMg01no116_d01.g1 CHROMAT_FILE:
MSMg01no116_d01.g1 PHD_FILE: MSMg01no116_d01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:22 2005
(470 letters)
>mm_chr8_108670984_108671853
Length = 870
Score = 598 bits (309), Expect = e-175
Identities = 371/401 (92%), Gaps = 16/401 (3%)
Strand = Plus / Plus
Query: 1 actttgtagaccaggctggccttgaactcagaaatccacctgcctctgcctcccaagtgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 actttgtagaccaggctggccttgaactcagaaatccacctgcctctgcctcccaagtgc 275
Query: 61 tgggattaaaggcttgcggcaccacggcccagagatcagcctgtttcaaacggtctgtca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 tgggattaaaggcttgcggcaccacggcccagagatcagcctgtttcaaacggtctgtca 335
Query: 121 ctctgtaagtgcagcacacgagtagagttgggagtggtttggatctgaaagtctgaacca 180
||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 ctc---------------cgagtagagttgggagtggtttggatctgaaagtctgaacca 380
Query: 181 tttctctgtaggattcccctgcaaagaacagggctcgagagctcatgttggcactttagc 240
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttctctgtaggattctcctgcaaagaacagggctcgagagctcatgttggcactttagc 440
Query: 241 ccctgtccgcgcaagcctgaggactctttctttctttctttctttctttctttctttctt 300
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 441 ccctgtccgcacaagcctgaggactctttctctctttctttctttctttctttctttctt 500
Query: 301 tctttctttctttctttctttctttctttctttctttctttctttctttctttctttctt 360
|||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||| |||
Sbjct: 501 tctttctttctttctttctttctttctttctttctttctttcttccttccttccttcctt 560
Query: 361 tctttctttctttctttccttctttctttctttccttcctt 401
||| ||||| ||| ||||||| ||| ||| ||| ||||||
Sbjct: 561 ccttcctttccttccttccttccttccttccttc-ttcctt 600
Score = 99.3 bits (51), Expect = 5e-25
Identities = 66/71 (92%)
Strand = Plus / Plus
Query: 3 tttgtagaccaggctggccttgaactcagaaatccacctgcctctgcctcccaagtgctg 62
|||||||| |||||| ||| ||||||||||||||||||||||||||||||| |||||||
Sbjct: 785 tttgtagaacaggctcacctggaactcagaaatccacctgcctctgcctcccgagtgctg 844
Query: 63 ggattaaaggc 73
|||||||||||
Sbjct: 845 ggattaaaggc 855
Score = 95.5 bits (49), Expect = 7e-24
Identities = 52/53 (98%)
Strand = Plus / Plus
Query: 1 actttgtagaccaggctggccttgaactcagaaatccacctgcctctgcctcc 53
|||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 674 actttgtagaccaggctggcctcgaactcagaaatccacctgcctctgcctcc 726
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 149
Number of extensions: 38
Number of successful extensions: 38
Number of sequences better than 10.0: 1
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 3
Length of query: 470
Length of database: 870
Length adjustment: 10
Effective length of query: 460
Effective length of database: 860
Effective search space: 395600
Effective search space used: 395600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
