BAC Information

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BAC

Clone NameMSMg01-116F23
Chromosome8 (Build37)
Map Location 19,710,405 - 19,711,041
singlet/doubletsinglet
Overlap genenone
Upstream geneMcph1, Angpt2, Agpat5, LOC100040486, Xkr5, Defb40, Defb37, Defb38, Defb39, Defb12, Defb34, EG546038, Spag11, Defb14, Defb4, EG654452, Defb6, EG574081, Defb5, Defb3, Defb54-ps, LOC100040504, LOC100040514, Defb8, LOC100040528, LOC100041511, Defb7, LOC670326, LOC100040561, LOC624198
Downstream geneEG665730, 4930467E23Rik, LOC100041567, LOC547150, LOC100040599, EG665822, 6820431F20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-116F23.T7 (MSMg01no116_f23.b1)MSMg01-116F23.TJ (MSMg01no116_f23.g1)
ACCAG327770AG327771
length721701
length of high quality
(start - end)
641 (51 - 691)292 (56 - 347)
definitionCHROMAT_FILE: MSMg01no116_f23.b1 PHD_FILE: MSMg01no116_f23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:22:36 2005CHROMAT_FILE: MSMg01no116_f23.g1 PHD_FILE: MSMg01no116_f23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:22:37 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NNAATATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCTGGGTCTGCACGCTGACCAGCGGTTCCAATGGTTGTAGG
TGCTTTAGTTTGCTCCTCTGTTCCTGTGATAAAACACTCATCAAAAAAAC
AACTTAGGAGAGGGAAGGATTAATTTGGGTTGTGGGTCACAGTCTACCAT
CAAAGGAAGCTTGTGCAAGAACTCAAGGCTGAAAACACAGAGGCAGGAAT
GGAAACAAAGACCATGGAGGAATGTTTACTGGCTTGCTCTATGTGGCTCA
CTCCGACAGCTTTCTTATACAGCCCAGGAGTATGTGCCCAAGGTTGGCAC
TGCCTACAGTGGTCTGAGCCCTCTCGCACCAATTAGAAATTAAGAAATGT
TTCTTCCACAGACATGACAACTGGCCGATCTGATAGGGGCAGTTCTTTAG
TTAAGGTTCCCCCTTTCAGGGGACTCCAAGCTTGTGCCAAGTTGACAACT
GAAGCTAGCTATGATAGGGGTCTTTGTCCAGTTCCCTTCTCCGGGCGTGT
ATCCATTTCTTTGTAGCTGAGACAGTCATTTGGTGGGCATTGCTGTCAGC
TAGTGGACACTTGAAAATCCTAGATTCTTAACCTGTGGGTAGTGATCCTC
TTGGGGTCTGCTATCCTGCATATCAGATATTACATTATGATTTATAGCAG
TAGCAGATTTACAGTTATGAA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTCAGCTGTAAAAGAATCCAGATGTTCTAAGATGATTTGGGGGGGA
TGCCCCAAGGATGCCAGATTTTTACAAAGACCTGCCAAGTCTTGATGTGT
GCTCCTTAGGAACCATTCTGGAAGAGATGCTGGGAAGTGCCCCCCCCGCC
ACTCCCCCTCCACCCCCCCAAGCAAGATATTCGTGAGAAAGGGAGGAAGA
CAGAGTTGGGTGGACAGAGGAGCTGAGCCTCAATGTAGTAGCCACTGAGG
TCTCTGCCAGTTCTACAGGAGCTGGGGAGGCTCCAAACTGTGATTATGTT
GTCCCTCACCACCACCTGTGTCAGCTTTACTCACTACAGGCTCTCATCTA
AGACAGTGGCTGAAGTTTTAACACAGCTCCTCCTGTTGTGAGGACTCTCA
ACCATAAAATTATCTTGTTGCAGTTCTCTCGACAGCTGTCCCTCTTTATA
AGTTGGCACTCCGTAAGGATGAAGCCATGTTCAGCTCCAGTGCCAAGACT
GTGAAGCCAAATGGGGAGAACCCGGATGAGTTCCAAGTCTGGTATCTCTC
ACGTGCTGCTCGAGCTGGAGATGAACGCACATGTCCAGTTTCTGCTGCAG
GAAGTCTCCTTCCCCCCTACCCAAGCAATATGTATTTGCGCGGTGCTCCC
A
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no116_f23.b1 MSMg01no116_f23.b1 CHROMAT_FILE:
MSMg01no116_f23.b1 PHD_FILE: MSMg01no116_f23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:36 2005
         (641 letters)



>mm_chr8_19710201_19711241
          Length = 1041

 Score = 1193 bits (617), Expect = 0.0
 Identities = 632/637 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctgggtctgcacgctgaccagcggttccaatggttgtaggtgctttagtttgct 64
           ||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctgggtcaggaggctgaccagcggttccaatggttgtaggtgctttagtttgct 264

                                                                       
Query: 65  cctctgttcctgtgataaaacactcatcaaaaaaacaacttaggagagggaaggattaat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cctctgttcctgtgataaaacactcatcaaaaaaacaacttaggagagggaaggattaat 324

                                                                       
Query: 125 ttgggttgtgggtcacagtctaccatcaaaggaagcttgtgcaagaactcaaggctgaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 325 ttgggttgtgggtcacagtctaccatcaaaggaagcttgtgcaagaactcaaggctggaa 384

                                                                       
Query: 185 acacagaggcaggaatggaaacaaagaccatggaggaatgtttactggcttgctctatgt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 acacagaggcaggaatggaaacaaagaccatggaggaatgtttactggcttgctctatgt 444

                                                                       
Query: 245 ggctcactccgacagctttcttatacagcccaggagtatgtgcccaaggttggcactgcc 304
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ggctcactctgacagctttcttatacagcccaggagtatgtgcccaaggttggcactgcc 504

                                                                       
Query: 305 tacagtggtctgagccctctcgcaccaattagaaattaagaaatgtttcttccacagaca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tacagtggtctgagccctctcgcaccaattagaaattaagaaatgtttcttccacagaca 564

                                                                       
Query: 365 tgacaactggccgatctgataggggcagttctttagttaaggttccccctttcaggggac 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgacaactggccgatctgataggggcagttctttagttaaggttccccctttcaggggac 624

                                                                       
Query: 425 tccaagcttgtgccaagttgacaactgaagctagctatgataggggtctttgtccagttc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tccaagcttgtgccaagttgacaactgaagctagctatgataggggtctttgtccagttc 684

                                                                       
Query: 485 ccttctccgggcgtgtatccatttctttgtagctgagacagtcatttggtgggcattgct 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ccttctccgggcgtgtatccatttctttgtagctgagacagtcatttggtgggcattgct 744

                                                                       
Query: 545 gtcagctagtggacacttgaaaatcctagattcttaacctgtgggtagtgatcctcttgg 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gtcagctagtggacacttgaaaatcctagattcttaacctgtgggtagtgatcctcttgg 804

                                                
Query: 605 ggtctgctatcctgcatatcagatattacattatgat 641
           |||||||||||||||||||||||||||||||||||||
Sbjct: 805 ggtctgctatcctgcatatcagatattacattatgat 841


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1041
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1031
Effective search space:   650561
Effective search space used:   650561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)