BAC Information

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BAC

Clone NameMSMg01-116K04
Chromosome8 (Build37)
Map Location 65,213,258 - 65,213,691
singlet/doubletsinglet
Overlap genenone
Upstream genePalld, BC013672, Anxa10, LOC100040775, LOC384830, LOC100040804, LOC665267
Downstream geneSpock3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-116K04.T7 (MSMg01no116_k04.b1)MSMg01-116K04.TJ (MSMg01no116_k04.g1)
ACCAG327968AG327969
length707690
length of high quality
(start - end)
442 (53 - 494)451 (84 - 534)
definitionCHROMAT_FILE: MSMg01no116_k04.b1 PHD_FILE: MSMg01no116_k04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:22:57 2005CHROMAT_FILE: MSMg01no116_k04.g1 PHD_FILE: MSMg01no116_k04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:22:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTACCGTTAATATCTATAAXXXXXXXXXXXXXXXXXXXXXCTATTCAAAG
AGGATCCGCGGAATTCTATTTCTACCTTGGTATTCACTTATTCTGATCAA
TCTGTTTCTAGGGTAAGTGAACAAAGAAAAATGAAATATACAAGTATATA
AAAAAGAGAGCATCACTACCCTGCACCAATGTGAACAGAGGCAATTATAT
AGGTTGTGAGTAATATTTGTTGCTTACAAGCTTAAGCACAAGAAAAGACT
CAGGTTTAATGTATGTTCATTGTTTCTTACTAAGTTATGTAATATTCTAA
AATTCTTCAAAGAGTAAAAGAGAAGAAAGTTCTTCACAAGTATTCATGAG
CTAAGATCTATGAATAATATTATGTTAGACCAAATAAAGAAGGTGGGCAT
ATAGTTGTATCCATACTAGGGAGACTGGGGCTGGGAGATTGTGCAATCAA
ATAAAATTTGCCTGGGTTGAGGGGGGGGGGAGGAAGGAAGGAACCAATCT
TCTTCTTCTATTGTTCTTTCGCTCCTTTCCTCCTTCTATAATATATTCTT
CTCCTTTCTCAACTCCCCTCCCCATATCACCCAATCCCAATTCCCTTTAT
CCCTTCATTCTCCACTCCATTTATATTTTCCTCTTCTTCTTTTATCTAAA
CATCTTTACTTTCTCTCTTATTTTATTCTCTTTATTTTTTATCTTTTCTT
TCCTTTA
ATCCTTCTAAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAGACTT
TTATCATGAATGGGTATTGGATCTTGTCGAATGCTTTTTCCGCATCTAAC
GAGATGATCATGTGGTTTTTGTCTTTGAGTTTGTTTATATAGTGGATTAC
ATTGATGGATTTCCGTATATTAAACCATCCCTGCATCCCTGGAATAAAAC
CTACTTGGTCAGGATGGATGATTGCTATAATGTGTTCTTGGATTCAGTTA
GCGAGAATTTTATTGAGGATTTTTGCATCTATATTTATAAGGGAAATTGG
TCTGAAGTTCTCTATCTTTGTTGGATCTTTCTGTGGTTTAGGTATCAGAG
TAATTGTGGCTTCATAGAATGAGTTGGGTAGAGTTCCATCTACTTCTATT
TTGTGGAATAGTTTATGCAGAACTGGAATTAGATCTTCTTTGAATACTCA
TAATAAAGAAAATGATATTATATTAAAGTTGGACAATGCAAATGATCAGA
AGGAAAGGAATCCCAAAGGAAGGCATGAGAATCAGAAACTCACACATTCA
CATCCTCAGGGATTCTGTAATACACTAAACCCAAGGCTATGACATATGTA
CAGAGGAACCCCTTGCCATCCATTAGCTTGCTGCTTCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no116_k04.b1 MSMg01no116_k04.b1 CHROMAT_FILE:
MSMg01no116_k04.b1 PHD_FILE: MSMg01no116_k04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:57 2005
         (442 letters)



>mm_chr8_65213050_65213892
          Length = 843

 Score =  717 bits (371), Expect = 0.0
 Identities = 419/435 (96%), Gaps = 3/435 (0%)
 Strand = Plus / Plus

                                                                       
Query: 9   gaattctatttctaccttggtattcacttattctgatcaatctgtttctagggtaagtga 68
           |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 gaattctatttctaacttgatattcacttattctgatcaatctgtttctagggtaagtga 268

                                                                       
Query: 69  acaaagaaaaatgaaatatacaagtatataaaaaagagagcatcactaccctgcaccaat 128
           ||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 269 acaaagaaaaatggaatatacaagtatataaaaaagaaaacatcactaccctgcaccaat 328

                                                                       
Query: 129 gtgaacagaggcaattatataggttgtgagtaatatttgttgcttacaagcttaagcaca 188
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 gtgaacagaggcagttatataggttgtgagtaatatttgttgcttacaagcttaagcaca 388

                                                                       
Query: 189 agaaaagactcaggtttaatgtatgttcattgtttcttactaagttatgtaatattctaa 248
           |||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||
Sbjct: 389 agaaaagactcaggtttaatgtatgttcattgtttgatactaagatatgtaatattctaa 448

                                                                       
Query: 249 aattcttcaaagagtaaaagagaagaaagttcttcacaagtattcatgagctaagatcta 308
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 aattcttcaaagagtaaaagagaagaaagttcttcacaagtattcatgagctaagatcta 508

                                                                       
Query: 309 tgaataatattatgttagaccaaataaagaaggtgggcatatagttgtatccatactagg 368
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 tgaaaaatattatgttagaccaaataaagaaggtgggcatatagttgtatccatactagg 568

                                                                       
Query: 369 gagactggggctgggag-attgtgcaatcaaataaaatttgcctgggttgaggg-ggggg 426
           |||||||||||||| || ||||||||||||||| ||||||||||| |||||| | |||||
Sbjct: 569 gagactggggctgg-aggattgtgcaatcaaatgaaatttgcctgtgttgagagaggggg 627

                          
Query: 427 ggaggaaggaaggaa 441
           |||||||||||||||
Sbjct: 628 ggaggaaggaaggaa 642


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 843
Length adjustment: 9
Effective length of query: 433
Effective length of database: 834
Effective search space:   361122
Effective search space used:   361122
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)