Query= MSMg01no116_p05.b1 MSMg01no116_p05.b1 CHROMAT_FILE:
MSMg01no116_p05.b1 PHD_FILE: MSMg01no116_p05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:23:21 2005
(561 letters)
>mm_chr8_83119341_83120301
Length = 961
Score = 1069 bits (553), Expect = 0.0
Identities = 559/561 (99%)
Strand = Plus / Plus
Query: 1 gaagtgctcttaaccattgagagacatctctccaaacccaaagaaactacttttggaggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaagtgctcttaaccattgagagacatctctccaaacccaaagaaactacttttggaggt 260
Query: 61 agacaaagttttgggatagtaaatggctttctgggaagacaagacgtgaataacaggtga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agacaaagttttgggatagtaaatggctttctgggaagacaagacgtgaataacaggtga 320
Query: 121 gagcaagtcaggaacagtcgggaacctgtccttctcaaacatcagagcttacattctcac 180
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 321 gagcaagtcaggaacagtcgggaacctgtccttctcaaacatcagagcttgcattctcac 380
Query: 181 atgatagagttgaccagcaccatcatcagagagagggtcattgtgatgtttattccaccc 240
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atggtagagttgaccagcaccatcatcagagagagggtcattgtgatgtttattccaccc 440
Query: 241 ctgagcataaataacaactgaaaacctaaaagcactccccctaacatctattctcagata 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgagcataaataacaactgaaaacctaaaagcactccccctaacatctattctcagata 500
Query: 301 ctgtatacctgtgacccacaaacaccactgacttcaggggggcaaaatcatacactggct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgtatacctgtgacccacaaacaccactgacttcaggggggcaaaatcatacactggct 560
Query: 361 ctcaggcttcacatagaagatagatgcttcctagattcttagggtgagggaattctttcc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctcaggcttcacatagaagatagatgcttcctagattcttagggtgagggaattctttcc 620
Query: 421 accaaaggttgatcttgacttcttctgagtaaataccataggagacctatttttatttta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 accaaaggttgatcttgacttcttctgagtaaataccataggagacctatttttatttta 680
Query: 481 aaattatgttcattattttcaattatgcacatgggtatatatgtctgtgtgcacatgagt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaattatgttcattattttcaattatgcacatgggtatatatgtctgtgtgcacatgagt 740
Query: 541 atggatgcccataaggatcaa 561
|||||||||||||||||||||
Sbjct: 741 atggatgcccataaggatcaa 761
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 961
Length adjustment: 10
Effective length of query: 551
Effective length of database: 951
Effective search space: 524001
Effective search space used: 524001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no116_p05.g1 MSMg01no116_p05.g1 CHROMAT_FILE:
MSMg01no116_p05.g1 PHD_FILE: MSMg01no116_p05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:23:21 2005
(565 letters)
>mm_chr8_83250801_83251771
Length = 971
Score = 1062 bits (549), Expect = 0.0
Identities = 563/571 (98%), Gaps = 6/571 (1%)
Strand = Plus / Minus
Query: 1 aagaaatgggtaccaacacttaggtctgtttgcttgataggagataaagaccaaagagta 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 771 aagaaatgggtaccaacacttaggtctgtttgcttgataggagataaagagcaaagagta 712
Query: 61 agtttttatatactatgtagtggtatttttatattaaaggaatttaattttagactaata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 agtttttatatactatgtagtggtatttttatattaaaggaatttaattttagactaata 652
Query: 121 acgaaataactggagaagagattaaaaagaaaggatctttacaaattgttaatagtttat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 acgaaataactggagaagagattaaaaagaaaggatctttacaaattgttaatagtttat 592
Query: 181 aattaccatactgtctggttattcaagaatcttactgagaaggcattaaagactagaaag 240
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 591 aattaccatactgtctggttactcaagaatcttactgagaaggcattaaagactagaaag 532
Query: 241 ctatatgaatttcttaa------ttttagtttgcttcactccttcttggaactcattgta 294
||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 531 ctatatgaatttcttaattttatttttagtttgcttcactccttcttggaactcattgta 472
Query: 295 taaagtccaagataatttatttggaaatgttagcttgttttttgaatatgttaaatcatt 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 taaagtccaagataatttatttggaaatgttagcttgttttttgaatatgttaaatcatt 412
Query: 355 ggaaatttgaggggccagatttctaaattagggtatagtggtaatagtcatagaatagta 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 ggaaatttgaggggccagatttctaaattagggtatagtggtaatagtcatagaatagta 352
Query: 415 attgttaaatatgagttgagtcaatttagtaatttgatgagctgttatgatacaaatgtg 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 attgttaaatatgagttgagtcaatttagtaatttgatgagctgttatgatacaaatgtg 292
Query: 475 agttaaattattgacttcttagccacatctttttgggacaaagtcatggaaatcatgaca 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 agttaaattattgacttcttagccacatctttttgggacaaagtcatggaaatcatgaca 232
Query: 535 ctattaagaataaagaacttagatttggaag 565
|||||||||||||||||||||||||||||||
Sbjct: 231 ctattaagaataaagaacttagatttggaag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 971
Length adjustment: 10
Effective length of query: 555
Effective length of database: 961
Effective search space: 533355
Effective search space used: 533355
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
