BAC Information

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BAC

Clone NameMSMg01-117E21
Chromosome8 (Build37)
Map Location 13,629,335 - 13,629,631
singlet/doubletsinglet
Overlap geneRasa3
Upstream geneTubgcp3, Atp11a, LOC100040229, Mcf2l, F7, F10, Proz, Pcid2, Cul4a, Lamp1, Grtp1, Adprhl1, Dcun1d2, Tmco3, Tfdp1, Atp4b, Grk1, Gm687, Gas6, LOC434282, 1700029H14Rik
Downstream gene4932443I19Rik, LOC665516, Cdc16, Upf3a, AF366264, D8Ertd457e, 2410022L05Rik, EG665536, Fbxo25, LOC100041103, 2610019F03Rik, EG546036, Erich1, Dlgap2, LOC100041140
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-117E21.T7 (MSMg01no117_e21.b1)MSMg01-117E21.TJ (MSMg01no117_e21.g1)
ACCAG328471AG328472
length718710
length of high quality
(start - end)
301 (76 - 376)394 (69 - 462)
definitionCHROMAT_FILE: MSMg01no117_e21.b1 PHD_FILE: MSMg01no117_e21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:23:49 2005CHROMAT_FILE: MSMg01no117_e21.g1 PHD_FILE: MSMg01no117_e21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:23:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGTCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGAATCC
GCGGAATTCTCAGGTGTTTCCATATGAAGCAGGATTAGAACTTCGTAGAA
AGAAGGGGATTTTAACTTATGTGTCCCCACTGACATTGACAGAGACACAC
TCTGGGAAAGGGTAACATGTTCCTACCTGTAGTGTAGGCTTCTCAAGAGA
GTCGTGTCAGAGTGGCTTTGCAATGTGTGTTTTTGGTGGCTTCTACAGTC
GCATCTCAAAAGGTTGTGTCCTGAAGATGCTACTTCAGGGATGTATACAA
TATAAGAAAAGTAATAAATTCAGACTGGTTTTGGTGACAACAATTTACTC
TATAGTTCCATTTATCCCTGATTGACGTGAACACAGATTCTTTTATTATA
ATCTCAATAACTAATATTAACTCTCAGATTACTCATTACAAATCACTCAG
CATATATAAATATGTGGGTATGCATGCATACACGTATGTATGCACATATG
TATCTACACTGCAGCAGAGCTCATGGGATTTCAAAAGTCTTGAGAACAGT
GAAACTGATACACAGTAATAATAACTCTTTATCGGTATAATAACAAGCCA
GGGTGAAGCTCAGAGGGCTGTAAGAGAGTCAGGCTGCTAGAACAGATTTG
AGCCTCAGGACTGATGTAACAAGAAGGGAGTGCCTAATCCAGGTGATTGT
ACTTTGTTATCTGATGAA
NTCATGCTGTGGTAGCCTGGCGGCGCCTGGCTTCAAATAAAGGTGAACTA
TAGAAGGTTCCCGAAATCACTTCGGTACACCAGGCTGTCTTTCAACTTAG
AAATCCATCTGCTTCTGCCTCTTGAGAGCTGGAATTAAAGGTGTGCACCA
CAGTTGACTAATACCACACTTCTTTATGATAATAATTGAAGCCAGGTAGT
ATGAATATTTAAATGTTCCCTCCTTCCTTAAAACTGTTGGTTTAGTCTGT
TTTCTCATTTGCATATGAATTTTTAGAACAGCTCTCCTAAAAAGATATGC
TGAATTTTAATTATGATTACATTGAATCTATAAATTGTTTCTGGAGAGAA
AACATTTTTCAGTCTCCCATCTCCTGATCTGTAGATATGGTCAGCATCAT
ATATTTATTACATTATTATTAATATATTATTATTATCCCAGCAACATTTC
ATAGTGCTCATTGTCAGAAGTGGCGCGTATTCAGCAAGACTTGTTCCTGG
GTGTTTCATCCTGTTTCAGTGGGTTTTAGTCCTAGTACAGGCTTTTATTA
TGCAGCTCAGGCTGACCTCTAAAACCTCCACCCTGTCATGAGAGAGAGCG
TGACTGTGTGTGTGCGCGTGTGTGTAAACCCAAAAAACCAACTCCTTCTG
CATAGGTCTTATTTGTACCTTGTCGAAAACCGGTTCTTTTATTTTCCCAC
ACCCTTACCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no117_e21.b1 MSMg01no117_e21.b1 CHROMAT_FILE:
MSMg01no117_e21.b1 PHD_FILE: MSMg01no117_e21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:23:49 2005
         (301 letters)



>mm_chr8_13629135_13629835
          Length = 701

 Score =  497 bits (257), Expect = e-145
 Identities = 287/297 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaagcaggattagaacttcgtagaaagaaggggattttaacttatgtgtccccactgaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||   |||||| 
Sbjct: 497 gaagcaggattagaacttcgtagaaagaaggggattttaacttatgtgtcagtactgacg 438

                                                                       
Query: 61  ttgacagagacacactctgggaaagggtaacatgttcctacctgtagtgtaggcttctca 120
           ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 437 ttgacagagacacactcggggaaagggtaacatgttcctacttgtagtgtaggcttctca 378

                                                                       
Query: 121 agagagtcgtgtcagagtggctttgcaatgtgtgtttttggtggcttctacagtcgcatc 180
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 agagagttgtgtcagagtggctttgcaatgtgtgtttttggtggcttctacagtcgcatc 318

                                                                       
Query: 181 tcaaaaggttgtgtcctgaagatgctacttcagggatgtatacaatataagaaaagtaat 240
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 317 tcaaaaggttgtgtcctgaagatgctacttcagggatgtatacaatgtaagaaaagtaat 258

                                                                    
Query: 241 aaattcagactggttttggtgacaacaatttactctatagttccatttatccctgat 297
           |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 257 aaattcagacaggttttggtgacaacaatttactctatagttccatttagccctgat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 301
Length of database: 701
Length adjustment: 9
Effective length of query: 292
Effective length of database: 692
Effective search space:   202064
Effective search space used:   202064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)