BAC Information

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BAC

Clone NameMSMg01-117J23
Chromosome8 (Build37)
Map Location 34,744,907 - 34,893,528
singlet/doubletdoublet
Overlap geneUbxd6, Gsr, Gtf2e2, Rbpms
Upstream geneLOC100042715, LOC628408, EG628412, Wrn, Purg, LOC666630, Hmgb1-rs17, Tex15, Ppp2cb
Downstream geneLOC100042769, Dctn6, LOC100042777, Mboat4, Leprotl1, LOC666694, Tmem66, LOC619780, LOC666718, EG234159, LOC666746, Dusp4, LOC675578, Tnks
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-117J23.T7 (MSMg01no117_j23.b1)MSMg01-117J23.TJ (MSMg01no117_j23.g1)
ACCAG328706AG328707
length744741
length of high quality
(start - end)
551 (41 - 591)566 (59 - 624)
definitionCHROMAT_FILE: MSMg01no117_j23.b1 PHD_FILE: MSMg01no117_j23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:24:14 2005CHROMAT_FILE: MSMg01no117_j23.g1 PHD_FILE: MSMg01no117_j23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:24:14 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,892,983 - 34,893,528)(34,744,907 - 34,745,468)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAATCCGCGGAATT
CCCAGCTGCTGTTCCTAGACATAATCACAATCTTTGTATCTTTGTTTTTG
ATCTGCTTGTGTTGTGTTGAAAAGGGTCATATTTTAATGATTTTTGTCAG
TGGTTTGGGAGGGTTATTTCATTATTTTTCATGAGAAGTAATGTCAAGTT
TTTAAAGGTTTAAAAAAAGAAACACCAAGGCCTGGAATATGGGCCTTTTC
ACTGTAAACTAGAGGACGGGGGCAGGCAGCACTGGGAACTTAGACATCCA
AGCTGGTGTTCAGGGACTGCTCATGGTCCCAGCCCCCGTGCCACTTGACT
GTGAGACTCCTACTTGCTTTATCATCAATTATGCTTTTATAAATTGTGTA
AAGGTACTTTTGTATTGTCATTTTTTAAAAAAAATAATAAAAGTTTATTC
CAGCCATTACATGATTTGTCTGACAACTTACATCAAGCAGGCATGTCCTA
GGATGCACAGATTTCCAAAGATTCTGCCAGTGATGGGAGTCAAGGTAATT
ACGACACACCCAGCTGCCACCAAGGGACCCACGGACCTCAGTAAAAGGTA
CCAGCCACCCTAACCTACAAAGTTTTGAGACAGGCAGACTCCATGACAGG
CTTCAGATTGGCAGTTCAGGAGACCAGTCAAGTCAGTTTCCTGAAAAAAG
CACCAGGTCTCCTCAGGCACCCAGTCAGAAAGTGACCTGCCACC
ATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTCCCAATTCTAGGACAGCCAGGGCTATACAGAAAAACCCTGT
CTCAAAAGACAAAAAAACAAAACAAAACAAACAAACAAACAAACAAAAGT
CCATGCCAGCTCCAGCATCTTCCACTCTGCCTGCTACCTGAGGACCAGGC
AGTAAAACTCTCAGCTACTCCTGCAGTACCATACTTATTTCCGTCCATGA
TGATCATGGACTAAGCAGGCCCCTAATTAAAGCTTCCTTTTAGAAAAGTT
GTCTTGGTTGTGGTGTCTCTTTGCAGCAACAGAACAGTGACTAACACTCG
GAAATAATTTTTTTTAATTATATATATACACACATACATATATATCATAT
GTAAGACATGGATGTTCTGGGAATGGAAGCACATATCCTTTATCTCAGCA
CTCAGGCCACCAAACTGAGACCAGAAGATCCTGAGACCGAGACCATCAGT
GGCTACAACAGTGGCCAGGGCAAGTCCAACTGTCCAAGTGGGTAAAGACA
TCAGTCTCCACGCCTGACCACCTGAGTTCAAACCCTGGGGCAAGGAGGGA
ACCAACTCTTTCCGCATGTGTCACACAGACACATGAATGAAGAAGGAATA
AAATGTAATAAATAAGGGTTTTTTTTTAATTGTAATTTTAAAGAGGCAAC
ATTTGAGTATGGTAATCCCAGCCCTTAAAAAATGTAAGAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no117_j23.b1 MSMg01no117_j23.b1 CHROMAT_FILE:
MSMg01no117_j23.b1 PHD_FILE: MSMg01no117_j23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:14 2005
         (551 letters)



>mm_chr8_34892950_34893900
          Length = 951

 Score = 1040 bits (538), Expect = 0.0
 Identities = 544/546 (99%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattcccagctgctgttcctagacataatcacaatctttgtatctttgtttttgatctg 65
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 gaattcccagctgctgttactagacataatcacaatctttgtatctttgtttttgatctg 520

                                                                       
Query: 66  cttgtgttgtgttgaaaagggtcatattttaatgatttttgtcagtggtttgggagggtt 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 cttgtgttgtgttgaaaagggtcatattttaatgatttttgtcagtggtttgggagggtt 460

                                                                       
Query: 126 atttcattatttttcatgagaagtaatgtcaagtttttaaaggtttaaaaaaagaaacac 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 atttcattatttttcatgagaagtaatgtcaagtttttaaaggtttaaaaaaagaaacac 400

                                                                       
Query: 186 caaggcctggaatatgggccttttcactgtaaactagaggacgggggcaggcagcactgg 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 caaggcctggaatatgggccttttcactgtaaactagaggacgggggcaggcagcactgg 340

                                                                       
Query: 246 gaacttagacatccaagctggtgttcagggactgctcatggtcccagcccccgtgccact 305
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 339 gaacttagacatccaagctggtgttcagggactgctcatggccccagcccccgtgccact 280

                                                                       
Query: 306 tgactgtgagactcctacttgctttatcatcaattatgcttttataaattgtgtaaaggt 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 tgactgtgagactcctacttgctttatcatcaattatgcttttataaattgtgtaaaggt 220

                                                                       
Query: 366 acttttgtattgtcattttttaaaaaaaataataaaagtttattccagccattacatgat 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 acttttgtattgtcattttttaaaaaaaataataaaagtttattccagccattacatgat 160

                                                                       
Query: 426 ttgtctgacaacttacatcaagcaggcatgtcctaggatgcacagatttccaaagattct 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 ttgtctgacaacttacatcaagcaggcatgtcctaggatgcacagatttccaaagattct 100

                                                                       
Query: 486 gccagtgatgggagtcaaggtaattacgacacacccagctgccaccaagggacccacgga 545
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99  gccagtgatgggagtcaaggtaattacgacacacccagctgccaccaagggacccacgga 40

                 
Query: 546 cctcag 551
           ||||||
Sbjct: 39  cctcag 34


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 951
Length adjustment: 10
Effective length of query: 541
Effective length of database: 941
Effective search space:   509081
Effective search space used:   509081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no117_j23.g1 MSMg01no117_j23.g1 CHROMAT_FILE:
MSMg01no117_j23.g1 PHD_FILE: MSMg01no117_j23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:14 2005
         (566 letters)



>mm_chr8_34744703_34745668
          Length = 966

 Score = 1079 bits (558), Expect = 0.0
 Identities = 561/562 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   aattctaggacagccagggctatacagaaaaaccctgtctcaaaagacaaaaaaacaaaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 aattctaggacagccagggctatacagaaaaaccctgtctcaaaagacaaaaaaacaaaa 264

                                                                       
Query: 65  caaaacaaacaaacaaacaaacaaaagtccatgccagctccagcatcttccactctgcct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 caaaacaaacaaacaaacaaacaaaagtccatgccagctccagcatcttccactctgcct 324

                                                                       
Query: 125 gctacctgaggaccaggcagtaaaactctcagctactcctgcagtaccatacttatttcc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gctacctgaggaccaggcagtaaaactctcagctactcctgcagtaccatacttatttcc 384

                                                                       
Query: 185 gtccatgatgatcatggactaagcaggcccctaattaaagcttccttttagaaaagttgt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtccatgatgatcatggactaagcaggcccctaattaaagcttccttttagaaaagttgt 444

                                                                       
Query: 245 cttggttgtggtgtctctttgcagcaacagaacagtgactaacactcggaaataattttt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cttggttgtggtgtctctttgcagcaacagaacagtgactaacactcggaaataattttt 504

                                                                       
Query: 305 tttaattatatatatacacacatacatatatatcatatgtaagacatggatgttctggga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tttaattatatatatacacacatacatatatatcatatgtaagacatggatgttctggga 564

                                                                       
Query: 365 atggaagcacatatcctttatctcagcactcaggccaccaaactgagaccagaagatcct 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 atggaagcacatatcctttatctcagcactcaggccaccaaactgagaccagaagatcct 624

                                                                       
Query: 425 gagaccgagaccatcagtggctacaacagtggccagggcaagtccaactgtccaagtggg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gagaccgagaccatcagtggctacaacagtggccagggcaagtccaactgtccaagtggg 684

                                                                       
Query: 485 taaagacatcagtctccacgcctgaccacctgagttcaaaccctggggcaaggagggaac 544
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 taaagacatctgtctccacgcctgaccacctgagttcaaaccctggggcaaggagggaac 744

                                 
Query: 545 caactctttccgcatgtgtcac 566
           ||||||||||||||||||||||
Sbjct: 745 caactctttccgcatgtgtcac 766


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 966
Length adjustment: 10
Effective length of query: 556
Effective length of database: 956
Effective search space:   531536
Effective search space used:   531536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)