Query= MSMg01no117_n02.b1 MSMg01no117_n02.b1 CHROMAT_FILE:
MSMg01no117_n02.b1 PHD_FILE: MSMg01no117_n02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:29 2005
(654 letters)
>mm_chr8_83249793_83250843
Length = 1051
Score = 1212 bits (627), Expect = 0.0
Identities = 645/651 (99%), Gaps = 5/651 (0%)
Strand = Plus / Plus
Query: 5 gaattctctcactattctctga-aactgaaagaaccaaagcccagtattagaacattctg 63
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctcactatt-tctgacaactgaaagaaccaaagcccagtattagaacattctg 263
Query: 64 aataaatatgcaaactctcagacacaaaaaatgttcatattaagtatcaaattaccttag 123
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aataaatat-caaactctcagacacaaaaaatgttcatattaagtatcaaattaccttag 322
Query: 124 atgttttcattttttatcctgtgagcttgcatctataactaagtatctccagttgaattt 183
|| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 323 at-ttttcattttttatcctgtgagctt-catctataactaagtatctccagttgaattt 380
Query: 184 tttgaacacagacttctctttaataagcatttcataagatgtgacacacacatcccactc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttgaacacagacttctctttaataagcatttcataagatgtgacacacacatcccactc 440
Query: 244 tcctggtaataaaacatccctgacaaatgcagcctgtaaaacaaaaaaaattacacaact 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcctggtaataaaacatccctgacaaatgcagcctgtaaaacaaaaaaaattacacaact 500
Query: 304 caactcaattacacattaaattcacttaacaagtaatcaaaaacaagaaaaaattagagt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caactcaattacacattaaattcacttaacaagtaatcaaaaacaagaaaaaattagagt 560
Query: 364 attaaacagagctaataaataagcatctaaagctaccatcctatcactgaaattacttca 423
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 561 attaaacagagctaataaataagcatttaaagctaccatcctatcactgaaattacttca 620
Query: 424 ttatcactttaatgtcagttttaacttagtttcaaaaagttgaagtgagtcacaaaattc 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttatcactttaatgtcagttttaacttagtttcaaaaagttgaagtgagtcacaaaattc 680
Query: 484 catagcttaactttaaaatgtctttccaaagttccacagatcttgccgttcttaggaagc 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 catagcttaactttaaaatgtctttccaaagttccacagatcttgccgttcttaggaagc 740
Query: 544 agggttaagaaagacctgacagttggtagtagatggtctcattcctctgatttgtagatg 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agggttaagaaagacctgacagttggtagtagatggtctcattcctctgatttgtagatg 800
Query: 604 tattggcacattactgttattattcttattttatagataaggatatgaagt 654
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tattggcacattactgttattattcttattttatagataaggatatgaagt 851
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1051
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1041
Effective search space: 670404
Effective search space used: 670404
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no117_n02.g1 MSMg01no117_n02.g1 CHROMAT_FILE:
MSMg01no117_n02.g1 PHD_FILE: MSMg01no117_n02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:29 2005
(554 letters)
>mm_chr8_83335363_83336316
Length = 954
Score = 1048 bits (542), Expect = 0.0
Identities = 551/554 (99%)
Strand = Plus / Minus
Query: 1 caggccaaccagggctatgtagtgagaccctgtatagaaaaacaaaaggaaacaaacaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 caggccaaccagggctatgtagtgagaccctgtatagaaaaacaaaaggaaacaaacaaa 742
Query: 61 attacaggattaagagttcaaattactgtctttcacatgtgtcagatggtgtgtggggac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 attacaggattaagagttcaaattactgtctttcacatgtgtcagatggtgtgtggggac 682
Query: 121 ttgcatatgtccattctccatggcttatctgtgtgtctctctgaagcttctgtgtgtgga 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 681 ttgcatatgtccattctccatggcttatctgtgtgtctctctgaagcttctgtgtgggga 622
Query: 181 acgaagacagggcagggggcagggagcacagggatagagagtggaaaactacaagcagga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acgaagacagggcagggggcagggagcacagggatagagagtggaaaactacaagcagga 562
Query: 241 cactccacagaggtcaggtcctccatcaagtacggggcccgagatttatgtaatgttagt 300
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 561 cactccacagaggtcgggtcctccatcaagtacggggcctgagatttatgtaatgttagt 502
Query: 301 taaagggaggcaaagtggcattcttcctatttgctgcccccttcccttgtcccaagtcca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taaagggaggcaaagtggcattcttcctatttgctgcccccttcccttgtcccaagtcca 442
Query: 361 ctcctccttcattctagttaaacatcaacgatgacatatttaaagtaaaacagcaaaatg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctcctccttcattctagttaaacatcaacgatgacatatttaaagtaaaacagcaaaatg 382
Query: 421 tgagaatctctcgtgtcctgtgggatgtctggagacatgtcacaaacccaaagccagccg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgagaatctctcgtgtcctgtgggatgtctggagacatgtcacaaacccaaagccagccg 322
Query: 481 ctgcagtctgaactcaggggctatatttagatgactgtgtggatcctgtattttttcagt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgcagtctgaactcaggggctatatttagatgactgtgtggatcctgtattttttcagt 262
Query: 541 gctgtaaacatgtt 554
||||||||||||||
Sbjct: 261 gctgtaaacatgtt 248
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 954
Length adjustment: 10
Effective length of query: 544
Effective length of database: 944
Effective search space: 513536
Effective search space used: 513536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
