BAC Information

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BAC

Clone NameMSMg01-117O11
Chromosome8 (Build37)
Map Location 98,829,664 - 98,830,123
singlet/doubletsinglet
Overlap genenone
Upstream geneBC016201, Map1lc3-ps6, 1700055M20Rik, Zfp319, AA960436, Mmp15, Gtl3, Csnk2a2, 4933406B17Rik, Ccdc113, 4931432M23Rik, EG546088, LOC100041040, Gins3, LOC547022, Ndrg4, Setd6, Cnot1, LOC100041953, LOC100041088, BC031853, LOC100041972, Got2, LOC667445
Downstream geneLOC333331
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-117O11.T7 (MSMg01no117_o11.b1)MSMg01-117O11.TJ (MSMg01no117_o11.g1)
ACCAG328914AG328915
length721721
length of high quality
(start - end)
460 (72 - 531)334 (71 - 404)
definitionCHROMAT_FILE: MSMg01no117_o11.b1 PHD_FILE: MSMg01no117_o11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:24:35 2005CHROMAT_FILE: MSMg01no117_o11.g1 PHD_FILE: MSMg01no117_o11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:24:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAAGGCGCGGAA
TTCATGTTTCTTTGCGAATTAGAAGAGAGGACAGAACATGGAATAAAATA
GCACTCCTTCCTATCATACTGCACTAAGAGATTAGCATATGAAGAAATCA
ATAACATGGGATGGAGGAGAACCAACCACCATCATTATCACCAAGAATTA
CATAGAAGTGGCAGAACATTTGAGAGACAAGGTTGTGACAGATGTGGGAG
GAAGGAGACACTATTTCAATGATACATAAATGGTTGTGAGTCCCATAACC
AATTCCTAGCAAGCATCTAATATTTGGCCTCTAACATGCCTCTTCAGCCT
ACTTCATTACTGGGAAGTGCTCTCTTTCTTAACAAACTCTCTGTTTCAAG
CACTATACATGCAGAAACTGTCCCAGTTCTCTGGTCTGGGACAGGAGATG
CTGGACATCCCAGCAGGTGAATAGCCAGCCAGAAAGTAAGATTTGTGTCA
AAACTTTTAAAAAATCTTTACCTCAAAGGGGCCCTTCCTTTCCACCTCCT
GTTCTCCTTCCCTCTCTCCCTCTTCTCTTCCCTCCCTTCCTTAATCCTCC
TTTCTCATCCTCCTTTCATTTTTCCCCAAAGCACATAGGAGACCATAGAC
CCAGATGCAGGAATTTCATGCTTACAGCTGGAACCTATGGTACAGGTACC
AGAGTGGTTAGCAGGGCACTA
ATGCTCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXATGAAAGTCATAAGGCAAATGGATGGGAGTAG
AAAATATCATCCTGAGTGAGGTAACCCAATTCCAAAAGAACACACATGAT
ATGCATTCACTGATAAGTAGGTATTAGCTCAGAACCCGAAATACCCAAGG
TACAATTCACAGACCAAATGAAGCCCAAGAAGAAGGAAGTTCCTTCTTAT
AAGGAGGAACAAAATATTTATGCGAGGAGATACAGAGATAGAGTTTGGAG
CAGAGACTGAAGCACAGACCATCAAGAGACTGCCCCAGCTGGGGATCCAT
CCCACATACAGTAACAAACCCAGACACTATTGTGGATGCCAACAAAAGCT
TGGTGACAGAAGCCTGATATAGCTGTCTCCTGAGAGGCTCTGCCCATGCC
TGACAAATACAGAGGGAGATGCTCATAGTCAACCAATGGACTGAGCACAG
GTTCCCCAATGGAATAGCTAGAGAAAGGACCCAAGGAGCTGAAGGGGTTC
GCATCCCCATAGGAGGAACAATATGAACTAACCAGTACCCCCAGAGGTTC
CCAGGACTAAACCACCAACCCAAGAATACCCATGGAGGGACCTATGGGTC
CCGTTTGGATATGCAGCAGAAGATAGGCCCTGTTGGAAATCAATGTGGAG
GAAAAGCTCCTTGGCCCTGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no117_o11.b1 MSMg01no117_o11.b1 CHROMAT_FILE:
MSMg01no117_o11.b1 PHD_FILE: MSMg01no117_o11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:35 2005
         (460 letters)



>mm_chr8_98829464_98830323
          Length = 860

 Score =  861 bits (445), Expect = 0.0
 Identities = 457/461 (99%), Gaps = 2/461 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaagagaggacagaacatggaataaaatagcactccttcctatcatactgcactaagaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 gaagagaggacagaacatggaataaaatagcactccttcctatcatactgcactaagaga 601

                                                                       
Query: 61  ttagcatatgaagaaatcaataacatgggatggaggagaaccaaccaccatcattatcac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 ttagcatatgaagaaatcaataacatgggatggaggagaaccaaccaccatcattatcac 541

                                                                       
Query: 121 caagaattacatagaagtggcagaacatttgagagacaaggttgtgacagatgtgggagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 caagaattacatagaagtggcagaacatttgagagacaaggttgtgacagatgtgggagg 481

                                                                       
Query: 181 aaggagacactatttcaatgatacataaatggttgtgagtcccataaccaattcctagca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 aaggagacactatttcaatgatacataaatggttgtgagtcccataaccaattcctagca 421

                                                                       
Query: 241 agcatctaatatttggcctctaacatgcctcttcagcctacttcattactgggaagtgct 300
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 agcatctaacatttggcctctaacatgcctcttcagcctacttcattactgggaagtgct 361

                                                                       
Query: 301 ctctttcttaacaaactctctgtttcaagcactatacatgcagaaactgtcccagttctc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 ctctttcttaacaaactctctgtttcaagcactatacatgcagaaactgtcccagttctc 301

                                                                       
Query: 361 tggtctgggacaggagatgctggacatcccagcaggtga-atagccagccagaaagtaag 419
           ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 300 tggtctgggacaggagatgctggacatcccagcaggt-atatagccagccagaaagtaag 242

                                                    
Query: 420 atttgtgtcaaaacttttaaaaaatctttacctcaaagggg 460
           |||||||||||||||||||||||| ||||||||||||||||
Sbjct: 241 atttgtgtcaaaacttttaaaaaaactttacctcaaagggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 860
Length adjustment: 10
Effective length of query: 450
Effective length of database: 850
Effective search space:   382500
Effective search space used:   382500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)