BAC Information

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BAC

Clone NameMSMg01-118A01
Chromosome8 (Build37)
Map Location 49,440,415 - 49,440,652
singlet/doubletsinglet
Overlap geneOdz3
Upstream gene4930448N21Rik, D030016E14Rik, Rwdd4a, LOC384819, LOC667422, Ing2, LOC546058, Cdkn2aip, LOC100039801, Cldn22, Wwc2, LOC100040113, Dctd
Downstream gene2900073C17Rik, LOC100039866
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-118A01.T7 (MSMg01no118_a01.b1)MSMg01-118A01.TJ (MSMg01no118_a01.g1)
ACCAG328990AG328991
length694693
length of high quality
(start - end)
240 (370 - 609)80 (323 - 402)
definitionCHROMAT_FILE: MSMg01no118_a01.b1 PHD_FILE: MSMg01no118_a01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:24:43 2005CHROMAT_FILE: MSMg01no118_a01.g1 PHD_FILE: MSMg01no118_a01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:24:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCACCTTTGCTATCCGTAATAGGTTTGAATGCTTTCATCTCATTA
TATGCTTTAAACATATCCATCTCATTAGCTCATTTAATGTCTAGGGAATA
TCTACTCTGTAATTTAACTGACAGAGCCAGTATTCATTAAAATCAATTTA
ACTCTGTCAGAAAAAAAAAAAAAAGAAAAGGAAAAAACCTGAGGTGTTTT
CCAGTTCAAATAGTTAAATCTGGATTTTGTCATAGCCTCTTCGTTCTGAG
TTCCTCCTCTGTATGGACATAGACCTTGACCACAAGCTTGACAATTGGAC
AAATGAGAACATTGGTGTGGGGTTTCTATTTATTGCCTTTTCTGTGTGGG
CGTCTGAAGCCAGAAAGCATTCTTGGACGGCGACTGAGAATTAGTGCCCT
TCCTTGTTGGGATATCTAATGTCAAAAAGTGCCAGTAGCCCTTAGCACTC
CATTTGGAATCTCACTTCGCCCTCGACGGAGGAACCTACAAGAGAGAGAG
CCAGCAAGACTTCCCTTGGCGTTCTTGTGTCTTGAGCAAAGTTGAAACAA
AATACTTGGAGTTTGCCTTGTTTCAACATCGGGAAGCTTTGTACGATAAT
ATAACAGTGTGCAAGGTGTTAGGGACGGAAGACATCCTGCTGTA
NNNNTTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTACACTCTTATGTTTTATGG
TAGACACTGTCATCCCGTCTCATTATTAAGGGCAGAGATCAGACGCTGAG
TGCCTCCGCGTGCCCATGTGTCAAAGCTTTGTGCTTAGCCGACTACTGTT
GGAAGGTGGTAGAAACCGTGGAGAGCGGAAGGATGGGGGAGGTCTTTATG
TCACTGCGGTATGCCCTGGAAGGGGACTATGGGATTCGGATCTCCTTTTC
TGCCCGACCCCCCGCCTCCTTCCTGGCTGATAATGTGCTTGGCTTGCTCC
TCCCAGTAAGTATCCCACAACATGCTGTCTTGGAGGGTGGAAGGAAGCAT
CGGAGCCGGGGCAGGGGCGTGCAATAGGACTCCTAAGCCTCGCGTCCTAA
CGACGCACTCGCCTTGCAAGGGGATTGATATCTTGGAAGCTTTGTTGTAA
TAGCAGAGAGTTGAGCCCGTGCCGCATCCGAGACTAGGAAAGAATTGGAC
CACCACGCCACACCATTGCAGAGAGGAGGCGAGGCTGCTATTTCAGTTTT
GGGGACCTGAATTTAGCATCGTTGCTGCTCTCTGGATCTCCTCCCCGCTC
CTTAAATGATTGAATTCCATGTCATTTCAGAAACCTTGGCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no118_a01.b1 MSMg01no118_a01.b1 CHROMAT_FILE:
MSMg01no118_a01.b1 PHD_FILE: MSMg01no118_a01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:43 2005
         (240 letters)



>mm_chr8_49440214_49440853
          Length = 640

 Score =  408 bits (211), Expect = e-118
 Identities = 232/239 (97%), Gaps = 2/239 (0%)
 Strand = Plus / Minus

                                                                       
Query: 2   ggtttctatttattgccttttctgtgtgggcgtctgaagccagaaagcattcttggacgg 61
           ||||||||||||||||||||||||||||  |||||||||||| ||||||||||||||| |
Sbjct: 439 ggtttctatttattgccttttctgtgtgtccgtctgaagccaaaaagcattcttggacag 380

                                                                       
Query: 62  cgactgagaattagtgcccttccttgttgggatatctaatgtcaaaaagtgccagtagcc 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 cgactgagaattagtgcccttccttgttgggatatctaatgtcaaaaagtgccagtagcc 320

                                                                       
Query: 122 cttagcactccatttggaatctcacttcgccctcgacggaggaacctacaagagagagag 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 cttagcactccatttggaatctcacttcgccctcgacggaggaacctacaagagagagag 260

                                                                      
Query: 182 ccagcaagacttcccttggcgtt-cttgtgtcttgagcaaagttgaaacaaaatacttg 239
           ||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||
Sbjct: 259 ccagcaagacttcccttgg-gtttcttgtgtcttgagcaaaggtgaaacaaaatacttg 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)