BAC Information

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BAC

Clone NameMSMg01-118F20
Chromosome8 (Build37)
Map Location 15,773,042 - 15,773,334
singlet/doubletsinglet
Overlap genenone
Upstream geneDlgap2, Cln8, Arhgef10, 2900016B01Rik, 5830468F06Rik, Kbtbd11, BB014433, Myom2, EG665599, EG234097, EG665619
Downstream geneLOC634008, Csmd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-118F20.T7 (MSMg01no118_f20.b1)MSMg01-118F20.TJ (MSMg01no118_f20.g1)
ACCAG329257AG329258
length730721
length of high quality
(start - end)
232 (74 - 305)294 (72 - 365)
definitionCHROMAT_FILE: MSMg01no118_f20.b1 PHD_FILE: MSMg01no118_f20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:25:11 2005CHROMAT_FILE: MSMg01no118_f20.g1 PHD_FILE: MSMg01no118_f20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:25:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAAAATTTGCGGCGCTAAACGACTACTATATGTCAGAGGAGGGGCGGAAT
TCTGTCCCTTCTCCTGAAATTGATCAATAGTTACATAGACCCATTTTCCA
GGTGGAAATTCTTCTTCTTCTTCCTCTTCTTCTTCTTCTTCTTCTTCTTC
TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTT
CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTTTCTTCTTCTTCTTCTTCT
TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC
TTCTTCTCCTCCTCGTCCTTCTCCAACAGAACATAGGGGTGGAAATAAAA
GAATTCGGGTGACCGACGGTATTGGATAAAAAATAATGCAGAATGGACAC
CAAGTGGTCAGAAACCCAAAAGGAGGCGTGCATTTACTGGACAAGAGTTT
TTAAACCGCTATACGACCATGCTGGGGGAGGCATTTATCCAAAGAAACCA
TGCGATATTTAAAGCAGAAAGCACGGGGGGTGCAGCAGTGACCGGCGCAT
AACAAGAATTGCAAGAAGGTAAAATTAAAGTAATTCCCGATGGCAGGGTA
ATGACGGTTCCCCTATTCATATAATATGGGCACTGCTTAAAAAGATATAT
AAACGGTAGGTGGTGGGATATGGTTTATCAACGTTCATTCCCGCGGTACA
TGGGTGGGGTGCCGGAATAGAAGGAAAGGC
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTGGAGTAAGTTGAACGGAATATTTTTTC
TTGGATGGTTTGTAATTTTTATGGCAAGATAGTAGAGGGTGTGTGACTAG
AGATTTTAATTTGAGTAAGTCAACAAAATGAATTAAAATCAACCTGTGAT
CTCAGATGGCTCCAATGTGGAGGTATGTTTGGCAGAAGCTAATTTTAATT
TGAAGGCCTTTTATCAGAAAATTTTAATGAAAGGTATTAAATTAATTATG
CTGATTAGAATTTTTTAAATGGAATAGTTCCTAATTTTGCAGACAACTTT
GTTCTTCATGTAACACCAATCATCTTGGACTGAGAGCTCCATGGTTTTAA
TTGATTAAAAACGTTCATATTTTCTGGGACTTGCAGTACTCTCTGTGAGT
ATCCAGGCATAGGCACGATACTGAAGGAAGAGCTGAGGGGTTCCTTTTCC
ACTTTGCTTTCCAGAAACTTGTTGACTCTACAAAAGCAACCCAGATCTCA
AGGATGGCTCTCAAGGTCTGGTGAAGTCCCAGGGGAGTCTAAGATTCCAA
CTTACTTTCACTGGAACAGAACCTGGCTCTTGAGCCAAGAATTGTTTGCA
CATACCCACCAGCAAGAATATACTGGTCCTCTCCTACGAAGCATACAGTC
CTGCGTGGTTCTCACCATATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no118_f20.g1 MSMg01no118_f20.g1 CHROMAT_FILE:
MSMg01no118_f20.g1 PHD_FILE: MSMg01no118_f20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:11 2005
         (294 letters)



>mm_chr8_15772842_15773536
          Length = 695

 Score =  505 bits (261), Expect = e-147
 Identities = 285/293 (97%), Gaps = 1/293 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttggagtaagttgaacggaatattttttcttggatggtttgtaatttttatggcaagata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttggagtaagttgaacggaatattttttcttggatggtttgtaatttttatggcaagata 260

                                                                       
Query: 61  gtagagggtgtgtgactagagattttaatttgagtaagtcaacaaaatgaattaaaatca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtagagggtgtgtgactagagattttaatttgagtaagtcaacaaaatgaattaaaatca 320

                                                                       
Query: 121 acctgtgatctcagatggctccaatgtggaggtatgtttggcagaagctaattttaattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acctgtgatctcagatggctccaatgtggaggtatgtttggcagaagctaattttaattt 380

                                                                       
Query: 181 gaaggccttttatcagaaaattttaatgaaaggtattaaattaattatgctgattagaat 240
           |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct: 381 gaaggccttttatcagaaaattttaatgaaagatattaaattaattatgctgattagatt 440

                                                                
Query: 241 ttttta-aatggaatagttcctaattttgcagacaactttgttcttcatgtaa 292
           |||||  |||  |||| ||||||||||||||||||||| ||||||||||||||
Sbjct: 441 tttttttaattcaatatttcctaattttgcagacaactatgttcttcatgtaa 493


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 695
Length adjustment: 9
Effective length of query: 285
Effective length of database: 686
Effective search space:   195510
Effective search space used:   195510
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)