BAC Information

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BAC

Clone NameMSMg01-118J07
Chromosome8 (Build37)
Map Location 60,113,080 - 60,113,262
singlet/doubletsinglet
Overlap geneGalnt7
Upstream geneEG624433, LOC654355, LOC100040515, Hand2, Scrg1, Sap30, Hmgb2, LOC547012, LOC100040634
Downstream geneLOC100040711, 4930431L04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-118J07.T7 (MSMg01no118_j07.b1)MSMg01-118J07.TJ (MSMg01no118_j07.g1)
ACCAG329416AG329417
length724713
length of high quality
(start - end)
186 (138 - 323)463 (79 - 541)
definitionCHROMAT_FILE: MSMg01no118_j07.b1 PHD_FILE: MSMg01no118_j07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:25:28 2005CHROMAT_FILE: MSMg01no118_j07.g1 PHD_FILE: MSMg01no118_j07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:25:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCGCTTTCGGACGAACTCTATAATTTGGGCGCTAATACGACTCACATCG
GACCGGATCCGCGGAATTCAGGCTTTCCTAAAAACCTACTTAAAACAAAT
CCCTGCATCGATAAGATGTTAGAATAAAACACTCACAATCTAAACATGTC
TAGCAGATGGTATTGTTAAGAAATTAAAGATACGCCAGTAGTACTTGATA
CTGCTGGGTCTTCAAGCTAGAGTCTGGCTCCATCCTTGAATGGAAGTGAT
GACACCAACCTGTGGTAGAGCAGTGGACAGAAAGCGTGCTGAGTATTGGT
TTTAAAATGGAAAGAGCCAGCGAGATTTCCTGGTTGTAAAGAGTTGTTTA
ACAGGCACAAGACCTGTTTTTTTTCTACTATCATAGCTAGATAAAGACAT
ATATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAG
ATAGATAGATAGATAGATAGATAAGATTTTGAATACAGAGCCGTGTTTCC
TGGTACTAGCTTCTGCTTCTAAATACCCACACTGTATAGTTTAATGTTTC
TTACCATCCCACCCGTTGACGTTCACTCACTTGACCCGCCTCACCCCTTT
TCGCCCCCTCTTCTCTCTTTTTTCCATTGTTCTCTCCCGGCCCCTTTTAA
CCGACTACCTCCCTCTTTTTTTTTCGCTTCCCAAAGTTTTACGGACTTAA
TCTCAACTTCACTTTTGTCCTTCT
NTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTTCTTTTTTTAAGATTTAT
TTATTTATTTTATGTATATCAGAACACTGTAGCTGTACAGATGGTTGTGA
GCCTTCATGTAGTTGTTGGGAATTGAATTTAGGACCTCTGCTCACTCCAG
TCGATCCTGCTCGCTCAGTCCCGGCTTGCTCTAGCCCAAAGATTTATTTA
TTATTATAAATAAGTACACTGTTGCTGTATTCAAACACACCAGAAGAGGG
TGTCAGATCTCATTATAGGTGGTTGTGAGCCACTATGTGGTTGCTGGGAT
TTGAACTCAGAACCTCTGGAAGAGCAGTCAGTGCTCTTACCCACTCTCTG
AGCCATCTCATCAGTGCAAGAATTTTTTTAATTTAATTTAATTTAATTTC
TATGCTTATTCACTTTACATCTCACTCAACCCCCCAGCTCCCTCTCCCAA
CACACACAATTCTTCCCCAATCTCTTCACCCCTTCTCTGAGCTGGTGGGA
CCCCTGTGGTTATCCCTCAACCCTGGCACTTCAAGTCTCTGCAAGATTAG
GTGCTTCCTCTTCCACTGAGGCCAGATAAGACAGGCCAGCTAATAAAGCA
GCTGCCTCCCGTTCTGTCTTAGATCTTAAGTCTTCCTTATTAGTAAACCC
ATTCCTCAATTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no118_j07.b1 MSMg01no118_j07.b1 CHROMAT_FILE:
MSMg01no118_j07.b1 PHD_FILE: MSMg01no118_j07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:28 2005
         (186 letters)



>mm_chr8_60112880_60113465
          Length = 586

 Score =  346 bits (179), Expect = e-100
 Identities = 182/183 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atctaaacatgtctagcagatggtattgttaagaaattaaagatacgccagtagtacttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atctaaacatgtctagcagatggtattgttaagaaattaaagatacgccagtagtacttg 260

                                                                       
Query: 61  atactgctgggtcttcaagctagagtctggctccatccttgaatggaagtgatgacacca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atactgctgggtcttcaagctagagtctggctccatccttgaatggaagtgatgacacca 320

                                                                       
Query: 121 acctgtggtagagcagtggacagaaagcgtgctgagtattggttttaaaatggaaagagc 180
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acctgtggtagagcaatggacagaaagcgtgctgagtattggttttaaaatggaaagagc 380

              
Query: 181 cag 183
           |||
Sbjct: 381 cag 383


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 186
Length of database: 586
Length adjustment: 8
Effective length of query: 178
Effective length of database: 578
Effective search space:   102884
Effective search space used:   102884
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)