BAC Information

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BAC

Clone NameMSMg01-118L04
Chromosome8 (Build37)
Map Location 75,557,807 - 75,557,999
singlet/doubletsinglet
Overlap geneLarge
Upstream geneLOC666033, Olfr372, Olfr373, Olfr374, Tpm4, Rab8a, Hsh2d, Cib3, 2510049I19Rik, Ap1m1, LOC384840, LOC100042405, Klf2, Eps15l1, Calr3, LOC100042421, 1700030K09Rik, Cherp, Slc35e1, Crsp7, LOC100042439, 9130011J15Rik, Tmem38a, Nwd1, Sin3b, F2rl3
Downstream geneLOC100039001, LOC666134, Crry-ps, LOC666146
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-118L04.T7 (MSMg01no118_l04.b1)MSMg01-118L04.TJ (MSMg01no118_l04.g1)
ACCAG329505AG329506
length709713
length of high quality
(start - end)
240 (68 - 307)194 (75 - 268)
definitionCHROMAT_FILE: MSMg01no118_l04.b1 PHD_FILE: MSMg01no118_l04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:25:38 2005CHROMAT_FILE: MSMg01no118_l04.g1 PHD_FILE: MSMg01no118_l04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:25:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGGATCCGCG
GAATTCNCACAGCGACCACTATTGGCTTATTCAACATTAACAGAAAGATT
ACAGGGCATCAAGACTTTGTTTCTGTGGGCTGAGGGCTTATCTTTGTTCA
CATAGCAACCAGTTGATGTATGACTTTACCCGGCGTCAAGGGGCAGTAGA
CAGAGGGGAGATTCCGGCCAGGTGGTGTTGACTCAGATAATATAGCCCTG
CTATGTCTTCACAGTCCCCTTTACCTTATGGTCAAGATGTTCCCAGGAAT
GTTTTAACTACGAGGTATACCCAGGTTTGTTTTTCTCTTTTCTCAGTCCC
AGCCAGCCTCTAGGCTCACAAACCAGCAATTTCTGAGTACTTTCATATGA
CTTACAGGTCTTGAACTTCCATCTTTCTTTCAGCATTTATTGTTACTCTC
ATAGATTTGAGGAGAAAGACTATTTTCCCACCTCCCACTACTTCTATTAA
GCCAGCCACTAAACCTAGCTTTTTTTTCTCTGCATATGTTCTGTCTCCCC
CTGTATATGATAATCTAGCACTCTCCCCCATTATTTGCCGTACCACTGGC
TTATTGCTCCCCCCGCCGGCGCGTTTTATTAACGCGTTTTTGGTATCGTT
AATCTTGTTCCCTTACTTTCACTCGTTTGCTCCTTCCCTCCCCATGTTCG
CCTTCTGCC
CCCGATGAAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTCTGAGGACCCCTGGGGAGGCGGTG
GGACCATGTAGGCACGGAGTCTCCCAGCTCAGAGCTGATGCACCTGAGTC
TCCACGTACACAGCGCCCCCAGTGCCAGTCCACAACAAAGCCAGAACTCA
TGCTGTCTGAAGCACAAGCCTCAATGGAGCACCCTACAGGCCTTGTGCAC
AAGGCCGTAACCCACCAGGTCCACCACTTAGGTGCGGTTCTTACCTGCCG
TTTCTGGTTATGACACATGCGCCACACCATCTCATCCCTGCTGCTGACCA
GGACGGTACGGTTCTACATCAAGGTATGGCAGCGTGGCGCTGATCCTGTC
ATCACACCGTGATCGCTCCTACCTCGTTAAGCATGCCTGCCTGTTCCTTC
TATCACGTGATCTGTTGCTGCCACCTCCAAGGACATATGACCTTGCGCTG
AGCTATTCCGGTAAAACCCCCCTCTCCCCTTTTTCTTTTCCCTGACCCCC
TCTGACACCTGTTTTTTTTGCATCCCTCCGCCCTTCCCCAATCCCATTCC
GTCCCCCAAACTTGCTCTTGCAATTCCAACCCCTTTTTTTTTTTGCCTTC
CAAAGAGCTTCGTGCTTTGTCCCCGACATTCCCTTACCTTCATACCCTCC
CCCTCCACATTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no118_l04.g1 MSMg01no118_l04.g1 CHROMAT_FILE:
MSMg01no118_l04.g1 PHD_FILE: MSMg01no118_l04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:38 2005
         (194 letters)



>mm_chr8_75557607_75558199
          Length = 593

 Score =  313 bits (162), Expect = 3e-90
 Identities = 186/194 (95%), Gaps = 1/194 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctctgaggacccctggggaggcggtgggaccatgtaggcacggagtctcccagctcagag 60
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 201 ctctgaggacccctggggaggcggtgggaccatggaggcacggagtctcccagctcagag 260

                                                                       
Query: 61  ctgatgcacctgagtctccacgtacacagcgcccccagtgccagtccacaacaaagccag 120
           |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct: 261 ctgatgcacctgagtctccacgtagacagcgcccccagtgccag-ccacaacaaagccag 319

                                                                       
Query: 121 aactcatgctgtctgaagcacaagcctcaatggagcaccctacaggccttgtgcacaagg 180
           ||||||||||| ||||||||| ||||||||||||||||||||| |||||||| |||||||
Sbjct: 320 aactcatgctgcctgaagcaccagcctcaatggagcaccctactggccttgtacacaagg 379

                         
Query: 181 ccgtaacccaccag 194
           ||| ||||||||||
Sbjct: 380 ccgcaacccaccag 393


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 593
Length adjustment: 8
Effective length of query: 186
Effective length of database: 585
Effective search space:   108810
Effective search space used:   108810
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)