Query= MSMg01no118_m11.b1 MSMg01no118_m11.b1 CHROMAT_FILE:
MSMg01no118_m11.b1 PHD_FILE: MSMg01no118_m11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:44 2005
(623 letters)
>mm_chr8_72578378_72579400
Length = 1023
Score = 1185 bits (613), Expect = 0.0
Identities = 619/621 (99%), Gaps = 1/621 (0%)
Strand = Plus / Plus
Query: 4 ggaattctagac-cacaccaggtacatagacatacatgcaggcaatacactcatatcata 62
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ggaattctagacacacacaaggtacatagacatacatgcaggcaatacactcatatcata 262
Query: 63 aaaaaaacttaaataaataaatattaacagccagcaaaaaagtaggatctcatgtagtcc 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 aaaaaaacttaaataaataaatattaacagccagcaaaaaagtaggatctcatgtagtcc 322
Query: 123 tggcctggttatcctggaactcactatgtagtgggtggcctcaaactccctgagatctac 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tggcctggttatcctggaactcactatgtagtgggtggcctcaaactccctgagatctac 382
Query: 183 ctgtctttgcctcccaaagagataaaagatgtgcactacctggaatttttcattaagact 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ctgtctttgcctcccaaagagataaaagatgtgcactacctggaatttttcattaagact 442
Query: 243 tttagatttgatttttattcatatgcctgtgggcctgtttgagttcatgtaatcttgtgg 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tttagatttgatttttattcatatgcctgtgggcctgtttgagttcatgtaatcttgtgg 502
Query: 303 ttgcagaagcccttgggtgcaagagacctgatatgggtataggccaccggatccaggttt 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ttgcagaagcccttgggtgcaagagacctgatatgggtataggccaccggatccaggttt 562
Query: 363 tttgcaacaacattaagtgctcttaactgttgagtcacctctccagcactggatcttttt 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tttgcaacaacattaagtgctcttaactgttgagtcacctctccagcactggatcttttt 622
Query: 423 agaaatgaaaaacccgtgggaaattgtggcatagcctccaccctcacctctacctcatag 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 agaaatgaaaaacccgtgggaaattgtggcatagcctccaccctcacctctacctcatag 682
Query: 483 gaacccactgctggcaggtagtgtctgagagtcctgtggtcatcctgtcctcagcagtgt 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 gaacccactgctggcaggtagtgtctgagagtcctgtggtcatcctgtcctcagcagtgt 742
Query: 543 gtagcattgtttaggttaaatcatagcctctctcattggatgcttttctgtttgacaaga 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 gtagcattgtttaggttaaatcatagcctctctcattggatgcttttctgtttgacaaga 802
Query: 603 gattgtctttatacccagagg 623
|||||||||||||||||||||
Sbjct: 803 gattgtctttatacccagagg 823
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1023
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1013
Effective search space: 620969
Effective search space used: 620969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no118_m11.g1 MSMg01no118_m11.g1 CHROMAT_FILE:
MSMg01no118_m11.g1 PHD_FILE: MSMg01no118_m11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:44 2005
(585 letters)
>mm_chr8_72666724_72667708
Length = 985
Score = 1100 bits (569), Expect = 0.0
Identities = 581/585 (99%)
Strand = Plus / Minus
Query: 1 caggacagccagggctacaccgagaccctgcttcaaacaaaacaaagcacagcaaaacaa 60
|||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct: 838 caggacagccagggctacacagagaccctgcttcaaacaaaacaaagcaaagcaaaacaa 779
Query: 61 aacaaaaatgtgcagaggggaagatggagtcctgtatattccacaagctcaggcctttgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 aacaaaaatgtgcagaggggaagatggagtcctgtatattccacaagctcaggcctttgg 719
Query: 121 acatagccagtgcgcacaacacagacttgagaccacactcacagagccaaacaggagggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 acatagccagtgcgcacaacacagacttgagaccacactcacagagccaaacaggagggg 659
Query: 181 ggcagagatatggtcaagggggtaaaagcacttgccacttaggctgatgacctgagctcg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 ggcagagatatggtcaagggggtaaaagcacttgccacttaggctgatgacctgagctcg 599
Query: 241 atgcctgggacacacatagattcctgtgatctgtcctgacttccatacagctatcatggc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 atgcctgggacacacatagattcctgtgatctgtcctgacttccatacagctatcatggc 539
Query: 301 acaagtgcacaccccacaccctcacacatacactaaatattagatcaaatccatgagtga 360
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 538 acaagtgcacaccccacaccctcacacatacactaaatattagataaaatccatgagtga 479
Query: 361 gtaaaagtcatatgcagaatggtctcaactccttgggaggctggagcagaactttttaag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 gtaaaagtcatatgcagaatggtctcaactccttgggaggctggagcagaactttttaag 419
Query: 421 cctgggtactcaaggtcagcctggggtgtacaagatccaactcagacacagcaggacagg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 cctgggtactcaaggtcagcctggggtgtacaagatccaactcagacacagcaggacagg 359
Query: 481 cagaagtggtagacacactcagccccttctgtcagggccctgcactgggcaggaggcaac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 cagaagtggtagacacactcagccccttctgtcagggccctgcactgggcaggaggcaac 299
Query: 541 ctaactctgcttaactgcggtcaggcctaaggctttgtgctcagc 585
||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 298 ctaactctgcttaactgtggtcaggcctaaggctttgtgctcagc 254
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 985
Length adjustment: 10
Effective length of query: 575
Effective length of database: 975
Effective search space: 560625
Effective search space used: 560625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|