BAC Information

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BAC

Clone NameMSMg01-118M11
Chromosome8 (Build37)
Map Location 72,578,580 - 72,667,561
singlet/doubletdoublet
Overlap geneSf4, Tm6sf2, Hapln4, Ncan, Rfxank, 2310073E15Rik, 2310045N01Rik
Upstream geneSlc18a1, Atp6v1b2, Lzts1, EG665540, D10627, LOC665553, D130040H23Rik, LOC665561, LOC670593, EG665578, LOC622336, LOC100041482, LOC673968, AI449175, EG636741, 1200003I07Rik, D330038O06Rik, Atp13a1, Gmip, Edg4, Pbx4, Cilp2, BC028663, Ndufa13, Tssk6, Gatad2a, LOC665649, 9130404D08Rik
Downstream geneMef2b, Tmem161a, Slc25a42, Armc6, Sfrs14, Homer3, Ddx49, Cope, Lass1, Upf1, Comp, Crtc1, Klhl26, Tmem59l, Crlf1, 2810428I15Rik, Uba52, Fkbp8, Ell, Isyna1, Ssbp4, Lrrc25, Gdf15, Pgpep1, Lsm4, Jund1, 2410018E23Rik, LOC100041434, Pde4c, Rab3a, BC051227, Ifi30, Pik3r2, LOC100041971, Mast3, Il12rb1, Arrdc2, Kcnn1, LOC100042011, Ccdc124, Slc5a5, Rpl18a, Snora68, Mtap1s, LOC100042057, LOC665858
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-118M11.T7 (MSMg01no118_m11.b1)MSMg01-118M11.TJ (MSMg01no118_m11.g1)
ACCAG329567AG329568
length702709
length of high quality
(start - end)
623 (41 - 663)585 (76 - 660)
definitionCHROMAT_FILE: MSMg01no118_m11.b1 PHD_FILE: MSMg01no118_m11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:25:44 2005CHROMAT_FILE: MSMg01no118_m11.g1 PHD_FILE: MSMg01no118_m11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:25:44 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,578,580 - 72,579,200)(72,666,977 - 72,667,561)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TAGACCACACCAGGTACATAGACATACATGCAGGCAATACACTCATATCA
TAAAAAAAACTTAAATAAATAAATATTAACAGCCAGCAAAAAAGTAGGAT
CTCATGTAGTCCTGGCCTGGTTATCCTGGAACTCACTATGTAGTGGGTGG
CCTCAAACTCCCTGAGATCTACCTGTCTTTGCCTCCCAAAGAGATAAAAG
ATGTGCACTACCTGGAATTTTTCATTAAGACTTTTAGATTTGATTTTTAT
TCATATGCCTGTGGGCCTGTTTGAGTTCATGTAATCTTGTGGTTGCAGAA
GCCCTTGGGTGCAAGAGACCTGATATGGGTATAGGCCACCGGATCCAGGT
TTTTTGCAACAACATTAAGTGCTCTTAACTGTTGAGTCACCTCTCCAGCA
CTGGATCTTTTTAGAAATGAAAAACCCGTGGGAAATTGTGGCATAGCCTC
CACCCTCACCTCTACCTCATAGGAACCCACTGCTGGCAGGTAGTGTCTGA
GAGTCCTGTGGTCATCCTGTCCTCAGCAGTGTGTAGCATTGTTTAGGTTA
AATCATAGCCTCTCTCATTGGATGCTTTTCTGTTTGACAAGAGATTGTCT
TTATACCCAGAGGGAACCTACAGACCTATGGTTGAGTTCAGTTTCTGAGG
CA
ACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCAGGGCTACACCGAGA
CCCTGCTTCAAACAAAACAAAGCACAGCAAAACAAAACAAAAATGTGCAG
AGGGGAAGATGGAGTCCTGTATATTCCACAAGCTCAGGCCTTTGGACATA
GCCAGTGCGCACAACACAGACTTGAGACCACACTCACAGAGCCAAACAGG
AGGGGGGCAGAGATATGGTCAAGGGGGTAAAAGCACTTGCCACTTAGGCT
GATGACCTGAGCTCGATGCCTGGGACACACATAGATTCCTGTGATCTGTC
CTGACTTCCATACAGCTATCATGGCACAAGTGCACACCCCACACCCTCAC
ACATACACTAAATATTAGATCAAATCCATGAGTGAGTAAAAGTCATATGC
AGAATGGTCTCAACTCCTTGGGAGGCTGGAGCAGAACTTTTTAAGCCTGG
GTACTCAAGGTCAGCCTGGGGTGTACAAGATCCAACTCAGACACAGCAGG
ACAGGCAGAAGTGGTAGACACACTCAGCCCCTTCTGTCAGGGCCCTGCAC
TGGGCAGGAGGCAACCTAACTCTGCTTAACTGCGGTCAGGCCTAAGGCTT
TGTGCTCAGCTGGGAACGAGCTGATATTCTGTGTCTGTGTGGCTTATATG
AGTGAATGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no118_m11.b1 MSMg01no118_m11.b1 CHROMAT_FILE:
MSMg01no118_m11.b1 PHD_FILE: MSMg01no118_m11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:44 2005
         (623 letters)



>mm_chr8_72578378_72579400
          Length = 1023

 Score = 1185 bits (613), Expect = 0.0
 Identities = 619/621 (99%), Gaps = 1/621 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctagac-cacaccaggtacatagacatacatgcaggcaatacactcatatcata 62
           |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ggaattctagacacacacaaggtacatagacatacatgcaggcaatacactcatatcata 262

                                                                       
Query: 63  aaaaaaacttaaataaataaatattaacagccagcaaaaaagtaggatctcatgtagtcc 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 aaaaaaacttaaataaataaatattaacagccagcaaaaaagtaggatctcatgtagtcc 322

                                                                       
Query: 123 tggcctggttatcctggaactcactatgtagtgggtggcctcaaactccctgagatctac 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tggcctggttatcctggaactcactatgtagtgggtggcctcaaactccctgagatctac 382

                                                                       
Query: 183 ctgtctttgcctcccaaagagataaaagatgtgcactacctggaatttttcattaagact 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ctgtctttgcctcccaaagagataaaagatgtgcactacctggaatttttcattaagact 442

                                                                       
Query: 243 tttagatttgatttttattcatatgcctgtgggcctgtttgagttcatgtaatcttgtgg 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tttagatttgatttttattcatatgcctgtgggcctgtttgagttcatgtaatcttgtgg 502

                                                                       
Query: 303 ttgcagaagcccttgggtgcaagagacctgatatgggtataggccaccggatccaggttt 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ttgcagaagcccttgggtgcaagagacctgatatgggtataggccaccggatccaggttt 562

                                                                       
Query: 363 tttgcaacaacattaagtgctcttaactgttgagtcacctctccagcactggatcttttt 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tttgcaacaacattaagtgctcttaactgttgagtcacctctccagcactggatcttttt 622

                                                                       
Query: 423 agaaatgaaaaacccgtgggaaattgtggcatagcctccaccctcacctctacctcatag 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 agaaatgaaaaacccgtgggaaattgtggcatagcctccaccctcacctctacctcatag 682

                                                                       
Query: 483 gaacccactgctggcaggtagtgtctgagagtcctgtggtcatcctgtcctcagcagtgt 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 gaacccactgctggcaggtagtgtctgagagtcctgtggtcatcctgtcctcagcagtgt 742

                                                                       
Query: 543 gtagcattgtttaggttaaatcatagcctctctcattggatgcttttctgtttgacaaga 602
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 gtagcattgtttaggttaaatcatagcctctctcattggatgcttttctgtttgacaaga 802

                                
Query: 603 gattgtctttatacccagagg 623
           |||||||||||||||||||||
Sbjct: 803 gattgtctttatacccagagg 823


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1023
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1013
Effective search space:   620969
Effective search space used:   620969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no118_m11.g1 MSMg01no118_m11.g1 CHROMAT_FILE:
MSMg01no118_m11.g1 PHD_FILE: MSMg01no118_m11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:44 2005
         (585 letters)



>mm_chr8_72666724_72667708
          Length = 985

 Score = 1100 bits (569), Expect = 0.0
 Identities = 581/585 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggacagccagggctacaccgagaccctgcttcaaacaaaacaaagcacagcaaaacaa 60
           |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct: 838 caggacagccagggctacacagagaccctgcttcaaacaaaacaaagcaaagcaaaacaa 779

                                                                       
Query: 61  aacaaaaatgtgcagaggggaagatggagtcctgtatattccacaagctcaggcctttgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 aacaaaaatgtgcagaggggaagatggagtcctgtatattccacaagctcaggcctttgg 719

                                                                       
Query: 121 acatagccagtgcgcacaacacagacttgagaccacactcacagagccaaacaggagggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 acatagccagtgcgcacaacacagacttgagaccacactcacagagccaaacaggagggg 659

                                                                       
Query: 181 ggcagagatatggtcaagggggtaaaagcacttgccacttaggctgatgacctgagctcg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 ggcagagatatggtcaagggggtaaaagcacttgccacttaggctgatgacctgagctcg 599

                                                                       
Query: 241 atgcctgggacacacatagattcctgtgatctgtcctgacttccatacagctatcatggc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 atgcctgggacacacatagattcctgtgatctgtcctgacttccatacagctatcatggc 539

                                                                       
Query: 301 acaagtgcacaccccacaccctcacacatacactaaatattagatcaaatccatgagtga 360
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 538 acaagtgcacaccccacaccctcacacatacactaaatattagataaaatccatgagtga 479

                                                                       
Query: 361 gtaaaagtcatatgcagaatggtctcaactccttgggaggctggagcagaactttttaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 gtaaaagtcatatgcagaatggtctcaactccttgggaggctggagcagaactttttaag 419

                                                                       
Query: 421 cctgggtactcaaggtcagcctggggtgtacaagatccaactcagacacagcaggacagg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 cctgggtactcaaggtcagcctggggtgtacaagatccaactcagacacagcaggacagg 359

                                                                       
Query: 481 cagaagtggtagacacactcagccccttctgtcagggccctgcactgggcaggaggcaac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 cagaagtggtagacacactcagccccttctgtcagggccctgcactgggcaggaggcaac 299

                                                        
Query: 541 ctaactctgcttaactgcggtcaggcctaaggctttgtgctcagc 585
           ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 298 ctaactctgcttaactgtggtcaggcctaaggctttgtgctcagc 254


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 985
Length adjustment: 10
Effective length of query: 575
Effective length of database: 975
Effective search space:   560625
Effective search space used:   560625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)