Query= MSMg01no119_a08.b1 MSMg01no119_a08.b1 CHROMAT_FILE:
MSMg01no119_a08.b1 PHD_FILE: MSMg01no119_a08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:26:03 2005
(658 letters)
>mm_chr8_3653477_3654534
Length = 1058
Score = 963 bits (498), Expect = 0.0
Identities = 522/530 (98%)
Strand = Plus / Minus
Query: 5 gaattcttgatgttgcctgataattggagtttctgttgaaaagtgttggattctcctgct 64
|||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 gaattcttgatgctgtctggtaattggagtttctgttgaaaagtgttggattctcctgct 471
Query: 65 gtatgcacatgtagagagtgggtaaccacagaacaggaggcccatgttaacttacttaac 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 gtatgcacatgtagagagtgggtaaccacagaacaggaggcccatgttaacttacttaac 411
Query: 125 tggctggaaacatgtcaactgtctgcgttttgaactggctgaatgcacacagacagtaat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 tggctggaaacatgtcaactgtctgcgttttgaactggctgaatgcacacagacagtaat 351
Query: 185 acatacaaaagacaaaggaaagttatggaaatattatcataaaatcattaccatccccca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 acatacaaaagacaaaggaaagttatggaaatattatcataaaatcattaccatccccca 291
Query: 245 cctttgtgctaggaatggaacttagggtccttataggctagggagtgttctatctctgag 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 cctttgtgctaggaatggaacttagggtccttataggctagggagtgttctatctctgag 231
Query: 305 atatacccctagtctcacccggctcctgtgtgtggcgcatgtggaatctagaggttaaca 364
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 230 atatacccctagtctcacccggctcctgtgtgtggcgcatgtggaatctagagattaaca 171
Query: 365 ttgtacatcttccttaatcgtttttcactttcttttttctttttgagaaaaggattctct 424
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 170 ttgtacatcttccttaatcgcttttcactttcttttttctttttgagaaaaggattctct 111
Query: 425 aggtagccctggctggctagaaacttgctatgtacaccaggatgaccttgaacttggagt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110 aggtagccctggctggctagaaacttgctatgtacaccaggatgaccttgaacttggagt 51
Query: 485 gatctgtctgcctttgcctcacatgcccacgggtttttatgcggtggctg 534
|||| |||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 50 gatccgtctgcctttgcctcacatgcccatgggtttttatgaggtggctg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1058
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1048
Effective search space: 679104
Effective search space used: 679104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no119_a08.g1 MSMg01no119_a08.g1 CHROMAT_FILE:
MSMg01no119_a08.g1 PHD_FILE: MSMg01no119_a08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:26:03 2005
(513 letters)
>mm_chr8_3509839_3510751
Length = 913
Score = 911 bits (471), Expect = 0.0
Identities = 512/547 (93%), Gaps = 34/547 (6%)
Strand = Plus / Plus
Query: 1 aagaccagccttggctacatagtcagtttgaggtcagcctaggatgtatgagatcctgcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 aagaccagccttggctacatagtcagtttgaggtcagcctaggatgtatgagatcctgcc 226
Query: 61 tttgagacaaacaactaaacaagttggagttgtattttagtggtcgagcacttagcctaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 tttgagacaaacaactaaacaagttggagttgtattttagtggtcgagcacttagcctaa 286
Query: 121 caccacattgctccatacca----------------------------catgctacacac 152
|||||||||||||||||||| ||||||||||||
Sbjct: 287 caccacattgctccataccagtgttcatcagggatttttgacactctccatgctacacac 346
Query: 153 acacacacacacacacacacacacacaca------tccctctcctccagggcttctttcc 206
||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 347 acacacacacacacacacacacacacacacacacatccctctcctccagggcttctttcc 406
Query: 207 tggcccagccaactcctagttccaatcttctctggccctgctcggcttttgatcgctgtc 266
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 407 tggcccagccaactcctagttccaatcttctctggccctgcgcggcttttgatcgctgtc 466
Query: 267 tcccgtttcctgtaggagacaacagcttccggcttctgtttgatgtggtggttatcctca 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 tcccgtttcctgtaggagacaacagcttccggcttctgtttgatgtggtggttatcctca 526
Query: 327 cctgctccctgtccttcctgctgtgcgcccgctcactgctccgtggcttcctgctgcaga 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 cctgctccctgtccttcctgctgtgcgcccgctcactgctccgtggcttcctgctgcaga 586
Query: 387 acgtgaggccctgttgtcacgagcgctggtgcccgccttgcccagccctggggccatggt 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 acgtgaggccctgttgtcacgagcgctggtgcccgccttgcccagccctggggccatggt 646
Query: 447 gggggtgatgacctaggggtttctagacagaccctcacctgggcttctcccataggagtt 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 gggggtgatgacctaggggtttctagacagaccctcacctgggcttctcccataggagtt 706
Query: 507 tgttgta 513
|||||||
Sbjct: 707 tgttgta 713
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 913
Length adjustment: 10
Effective length of query: 503
Effective length of database: 903
Effective search space: 454209
Effective search space used: 454209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
