BAC Information

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BAC

Clone NameMSMg01-119A21
Chromosome8 (Build37)
Map Location 90,265,603 - 90,403,678
singlet/doubletdoublet
Overlap geneZfp423
Upstream geneSiah1a, ENSMUSG00000074178, BC004022, LOC666960, EG625298, EG330819, Cbln1, LOC100040294, 4933402J07Rik
Downstream geneLOC100040328, 5033428A16Rik, Heatr3, Papd5, Adcy7, Brd7, LOC100040369, Nkd1, 9130017C17Rik, Nod2, Cyld, LOC675985
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-119A21.T7 (MSMg01no119_a21.b1)MSMg01-119A21.TJ (MSMg01no119_a21.g1)
ACCAG329771AG329772
length719714
length of high quality
(start - end)
484 (72 - 555)475 (70 - 544)
definitionCHROMAT_FILE: MSMg01no119_a21.b1 PHD_FILE: MSMg01no119_a21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:26:05 2005CHROMAT_FILE: MSMg01no119_a21.g1 PHD_FILE: MSMg01no119_a21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:26:05 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,265,603 - 90,266,085)(90,403,256 - 90,403,678)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGGAA
TTCTCAACTGCCTATCCGAAGTCGAATGCACGCCCATATTCGCGTGACAA
AGAAAGGGCTTTGCAAGCTGTCCAGGCCTCGCCTGGAGGAAGGCAGCAAT
GCTGTTGATGTTATTATTATTACCTAGAAACTTCCAAGGTGAGGCCCAGC
AGACCTCTTCCCTCCCTCGTCACTAACAGTATGGTGGCACAATACAAATG
ACGCTTCGATTTAATTACCATCCTTTCTCCCCCTCCGGTAACTAAACATT
TTCCTCTGCTCAGTATCCCTGGAATGACAGGGCCATTCCCAGTGTATTAC
TTGCATATCTATAATTAAATAATTAAGAATTGTTCAAGCCCTTCCAAACA
CAATAAAAGGCGATGATTATTTCAAACCCACTTTAGGAGAAGTCAAGCCC
CGATCAGTTCCATCTTTTGCTAATAGTTATGCAAGGCTGCGCCGGCAGCA
TTCCCTCTTGCATGCCAGTACACCAATAAATTAAGATATTCCTGGCCGCA
TCTGTACGAGGGAAATTATAGCATTACCTGGTCCCCGCCAGTGTGCCAGC
TCCGAGCGGCAGGCGCATCCCACGCTGGGTGACCAGCTGTCTGTGAATGT
GGCGTGCGGATTACAGCTCGGAGCCAGGGGATCTCTTAGGAGGTCTGCTC
TAATATTATAACTGCCGCN
TGCTGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCACGCACAATGTCTTGAAACTGTTTTTCTTA
ACTTCTAATCCTGCTCCCCCTTAGGTTATACTTTCTCATTAAGCCACATA
AGAGGCTGAGCTTTGTGCGTTTTGTAGTGAAACGGAGGCGCAGCCAAGTG
GGCAGTGCTGTCGGAAATAAGAATGGACAGCTCTTGAGAGCTGTGGTCTC
TGTAAACCCCGTAGAGCTGGCTTGGCTCTTGCAGTGTCTGAGCTTGCTTT
AGGGCCTCTGCATGAGCTTTCTACCTGCAACACCTTACTCCCACCTTTTC
ATGTCTGGCTCTTTGTGCTATTTTAGCGCTGCCTCAAATGTCCCCTTCCT
AGAAAGGCTCTTTGCTGGCCACTAGAATGCCAGTTGCTTCCTCACCTCCC
ATCACTGTCTTGCCTCTTGCTTGGTACTTATGCCCATCACCATCTAGGGC
TTCCTGACTTCTGTGCTCCTTGATGCTGTTGATGTCAGTGTCCTCTGGTT
GAAACAATGCCTGATACTCTATGGTTCCTCAAGGCATATGCATGTTCTCT
GTTACAACCTACGGGACCCCTCCTCCACTTCCTATGCCAGGCACGAAGGC
GTGCTTAAGAGAGAAGCTGCGTCCCAAAGCATACTTTGTCCAGCTGTCTG
AGGTGAGTCTTTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no119_a21.b1 MSMg01no119_a21.b1 CHROMAT_FILE:
MSMg01no119_a21.b1 PHD_FILE: MSMg01no119_a21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:26:05 2005
         (484 letters)



>mm_chr8_90265403_90266286
          Length = 884

 Score =  911 bits (471), Expect = 0.0
 Identities = 480/483 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcgaatgcacgcccatattcgcgtgacaaagaaagggctttgcaagctgtccaggcctcg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcgaatgcacgcccatattcgcgtgacaaagaaagggctttgcaagctgtccaggcctcg 260

                                                                       
Query: 61  cctggaggaaggcagcaatgctgttgatgttattattattacctagaaacttccaaggtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctggaggaaggcagcaatgctgttgatgttattattattacctagaaacttccaaggtg 320

                                                                       
Query: 121 aggcccagcagacctcttccctccctcgtcactaacagtatggtggcacaatacaaatga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggcccagcagacctcttccctccctcgtcactaacagtatggtggcacaatacaaatga 380

                                                                       
Query: 181 cgcttcgatttaattaccatcctttctccccctccggtaactaaacattttcctctgctc 240
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcttcgatttaattaccatcctttctccccctccggtaactaaacattttcctctgctc 440

                                                                       
Query: 241 agtatccctggaatgacagggccattcccagtgtattacttgcatatctataattaaata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtatccctggaatgacagggccattcccagtgtattacttgcatatctataattaaata 500

                                                                       
Query: 301 attaagaattgttcaagcccttccaaacacaataaaaggcgatgattatttcaaacccac 360
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 501 attaagaattgttcaagcccttccaaacacaacaaaaggcgatgattatttcaaacccac 560

                                                                       
Query: 361 tttaggagaagtcaagccccgatcagttccatcttttgctaatagttatgcaaggctgcg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttaggagaagtcaagccccgatcagttccatcttttgctaatagttatgcaaggctgcg 620

                                                                       
Query: 421 ccggcagcattccctcttgcatgccagtacaccaataaattaagatattcctggccgcat 480
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 621 ccggcagcattccctcttgcatgccagcacaccaataaattaagatattcctggccgcat 680

              
Query: 481 ctg 483
           |||
Sbjct: 681 ctg 683


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 884
Length adjustment: 10
Effective length of query: 474
Effective length of database: 874
Effective search space:   414276
Effective search space used:   414276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no119_a21.g1 MSMg01no119_a21.g1 CHROMAT_FILE:
MSMg01no119_a21.g1 PHD_FILE: MSMg01no119_a21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:26:05 2005
         (475 letters)



>mm_chr8_90403256_90404130
          Length = 875

 Score =  795 bits (411), Expect = 0.0
 Identities = 420/423 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacgcacaatgtcttgaaactgtttttcttaacttctaatcctgctcccccttaggttat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 cacgcacaatgtcttgaaactgtttttcttaacttctaatcctgctcccccttaggttat 364

                                                                       
Query: 61  actttctcattaagccacataagaggctgagctttgtgcgttttgtagtgaaacggaggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 actttctcattaagccacataagaggctgagctttgtgcgttttgtagtgaaacggaggc 304

                                                                       
Query: 121 gcagccaagtgggcagtgctgtcggaaataagaatggacagctcttgagagctgtggtct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 gcagccaagtgggcagtgctgtcggaaataagaatggacagctcttgagagctgtggtct 244

                                                                       
Query: 181 ctgtaaaccccgtagagctggcttggctcttgcagtgtctgagcttgctttagggcctct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 ctgtaaaccccgtagagctggcttggctcttgcagtgtctgagcttgctttagggcctct 184

                                                                       
Query: 241 gcatgagctttctacctgcaacaccttactcccaccttttcatgtctggctctttgtgct 300
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 183 gcatgagctttctacctgcaacaccttactcccaccttttcatgcctggctctttgtgct 124

                                                                       
Query: 301 attttagcgctgcctcaaatgtccccttcctagaaaggctctttgctggccactagaatg 360
           ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 123 attttagtgctgcctcaaatgtccccttcctagaaaggctctttgttggccactagaatg 64

                                                                       
Query: 361 ccagttgcttcctcacctcccatcactgtcttgcctcttgcttggtacttatgcccatca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63  ccagttgcttcctcacctcccatcactgtcttgcctcttgcttggtacttatgcccatca 4

              
Query: 421 cca 423
           |||
Sbjct: 3   cca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 875
Length adjustment: 10
Effective length of query: 465
Effective length of database: 865
Effective search space:   402225
Effective search space used:   402225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)