BAC Information

Click to search

BAC

Clone NameMSMg01-119D14
Chromosome8 (Build37)
Map Location 127,196,487 - 127,277,286
singlet/doubletdoublet
Overlap geneTtc13, Arv1, 2310031A18Rik
Upstream geneLOC100042484, LOC100042490, Rab4a, 1700054N08Rik, LOC100043296, Acta1, Nup133, Abcb10, Taf5l, AK122209, LOC100042530, LOC100042535, Galnt2, Pgbd5, Cog2, Agt, Capn9, 2310022B05Rik
Downstream geneLOC668444, Trim67, 2810004N23Rik, Gnpat, Exoc8, Gm505, Egln1, Tsnax, Disc1, Sipa1l2, 4933403G14Rik, 2310079N02Rik, E330039K12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-119D14.T7 (MSMg01no119_d14.b1)MSMg01-119D14.TJ (MSMg01no119_d14.g1)
ACCAG329897AG329898
length709705
length of high quality
(start - end)		638 (72 - 709)629 (74 - 702)
definitionCHROMAT_FILE: MSMg01no119_d14.b1 PHD_FILE: MSMg01no119_d14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:26:18 2005CHROMAT_FILE: MSMg01no119_d14.g1 PHD_FILE: MSMg01no119_d14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:26:18 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(127,196,487 - 127,197,124)(127,276,658 - 127,277,286)
sequence
NTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCCATGATCCCTGAGAAAATTGCATACCAGGTTTGTCATGAACCATA
ACTGTGCAACATGTGGCTGTGTGGTTTGTGGAAAGATTTGCTGAAATTAC
CTAAAGGAAGCAGGACCCTCCACCTTGCGGCCACATCAACAAACCATGTG
TAAATGAGTAACCTCAAAAACATACTCTGGGACAAGCTAAGCAATGTGGA
TGACAGACACGTATTTCTCAGTTTTAAACACAGCTCAAGTGGCCCACTAG
ATGACACAGTGGCTGGTGTCATGTAGGCAAGAAGGGATGTGGAATAAGTC
ACAGTGTCTAGCTCAAGCTTGTTTGTACTCACTGCCCAGCATTTCTGGAG
GTACAGCTCTTAGGCACCTTGCTGGATTCTGGCACAAGGCGACAATGTGG
GTGGCGGGTGTTTGTGTGTGTGCGTGTGTATGTGTGTGCGTATTTATGTA
TGTGTGTACGTGCGAGTGTGTGCGTGTGTATGTGTTAGCCCTAGGTTGAC
ATTGAGACTCTCCCTTGACTCCTCTCCACTGTATTTATTGCTGAGCTCAG
AGTTCACAGATACAGGCTAGCTGAGCTGGCCACCTTGGTCTTGGGATCTT
GTCTGAATTCCATCTGACCTGTGACCTACCACAACCACCCAGAATGTTAT
TTGGGCTCG

NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGGCCAGGTTGTGAAAGGCAGGTCTGT
TTCCTCCCCTCCCCTCCCTTCTTCCCTTCCTCCCACACAGACAATCTCAG
ACTCCCCAATTGCTTAACAGGTAGATGATGAAGGATGGCCTAGGGTTTGG
GAAGGTGGCTGGATAATTACTGAAGGTGAGACACTGGATTACTGGGAAAA
TACTGGGCAGGTAGGTAGGTGGTCTCCTGGGTGCCCCTCGGATCTCACTG
TCTGGCTGGATTCAACACTAACTTCTCAGATTGATTTTCGGGGTGGGTTC
CACGCACAGCAGAAGAAAGCCCCCAAAGCAAGAGGGCACATTTATAGAAG
GTATCTGAACTACCTGAAACATGTTCCTGCTGGATTAATTCAGAGTCATT
CAGTCCCTTTATAGTTAGACTGAGTAGCCATTGGCATTGAAGTTCTTGAT
ATTGACTCTAGGTTTCTCTGCTATTGGCCAGACTTCTGTTTCCTCATCTT
GAATCTGAGCCGGTTACCTTTTGCTAAGGTTTGAGTCTTCCTGGAAGGGC
GAATCCTCTCTCTAATCCATCTCTCTCCTCTTCAGGGTGTACTTTTACTC
AGTTTTGCTGAAGTTGGTGAAGTTCCGAGATTCAACGTCTTTCTCTAACT
CCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no119_d14.b1 MSMg01no119_d14.b1 CHROMAT_FILE:
MSMg01no119_d14.b1 PHD_FILE: MSMg01no119_d14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:26:18 2005
         (638 letters)



>mm_chr8_127196287_127197324
          Length = 1038

 Score = 1218 bits (630), Expect = 0.0
 Identities = 636/638 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attgcataccaggtttgtcatgaaccataactgtgcaacatgtggctgtgtggtttgtgg 60
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attgcataccaggtttgccatgaaccataactgtgcaacatgtggctgtgtggtttgtgg 260

                                                                       
Query: 61  aaagatttgctgaaattacctaaaggaagcaggaccctccaccttgcggccacatcaaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaagatttgctgaaattacctaaaggaagcaggaccctccaccttgcggccacatcaaca 320

                                                                       
Query: 121 aaccatgtgtaaatgagtaacctcaaaaacatactctgggacaagctaagcaatgtggat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaccatgtgtaaatgagtaacctcaaaaacatactctgggacaagctaagcaatgtggat 380

                                                                       
Query: 181 gacagacacgtatttctcagttttaaacacagctcaagtggcccactagatgacacagtg 240
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gacagacacatatttctcagttttaaacacagctcaagtggcccactagatgacacagtg 440

                                                                       
Query: 241 gctggtgtcatgtaggcaagaagggatgtggaataagtcacagtgtctagctcaagcttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gctggtgtcatgtaggcaagaagggatgtggaataagtcacagtgtctagctcaagcttg 500

                                                                       
Query: 301 tttgtactcactgcccagcatttctggaggtacagctcttaggcaccttgctggattctg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttgtactcactgcccagcatttctggaggtacagctcttaggcaccttgctggattctg 560

                                                                       
Query: 361 gcacaaggcgacaatgtgggtggcgggtgtttgtgtgtgtgcgtgtgtatgtgtgtgcgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcacaaggcgacaatgtgggtggcgggtgtttgtgtgtgtgcgtgtgtatgtgtgtgcgt 620

                                                                       
Query: 421 atttatgtatgtgtgtacgtgcgagtgtgtgcgtgtgtatgtgttagccctaggttgaca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atttatgtatgtgtgtacgtgcgagtgtgtgcgtgtgtatgtgttagccctaggttgaca 680

                                                                       
Query: 481 ttgagactctcccttgactcctctccactgtatttattgctgagctcagagttcacagat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttgagactctcccttgactcctctccactgtatttattgctgagctcagagttcacagat 740

                                                                       
Query: 541 acaggctagctgagctggccaccttggtcttgggatcttgtctgaattccatctgacctg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 acaggctagctgagctggccaccttggtcttgggatcttgtctgaattccatctgacctg 800

                                                 
Query: 601 tgacctaccacaaccacccagaatgttatttgggctcg 638
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tgacctaccacaaccacccagaatgttatttgggctcg 838


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1038
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1028
Effective search space:   645584
Effective search space used:   645584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no119_d14.g1 MSMg01no119_d14.g1 CHROMAT_FILE:
MSMg01no119_d14.g1 PHD_FILE: MSMg01no119_d14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:26:18 2005
         (629 letters)



>mm_chr8_127276458_127277486
          Length = 1029

 Score = 1170 bits (605), Expect = 0.0
 Identities = 623/629 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggccaggttgtgaaaggcaggtctgtttcctcccctcccctcccttcttcccttcctcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 829 aggccaggttgtgaaaggcaggtctgtttcctcccctcccctcccttcttcccttcctcc 770

                                                                       
Query: 61  cacacagacaatctcagactccccaattgcttaacaggtagatgatgaaggatggcctag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 cacacagacaatctcagactccccaattgcttaacaggtagatgatgaaggatggcctag 710

                                                                       
Query: 121 ggtttgggaaggtggctggataattactgaaggtgagacactggattactgggaaaatac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 ggtttgggaaggtggctggataattactgaaggtgagacactggattactgggaaaatac 650

                                                                       
Query: 181 tgggcaggtaggtaggtggtctcctgggtgcccctcggatctcactgtctggctggattc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 tgggcaggtaggtaggtggtctcctgggtgcccctcggatctcactgtctggctggattc 590

                                                                       
Query: 241 aacactaacttctcagattgattttcggggtgggttccacgcacagcagaagaaagcccc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 aacactaacttctcagattgattttcggggtgggttccacgcacagcagaagaaagcccc 530

                                                                       
Query: 301 caaagcaagagggcacatttatagaaggtatctgaactacctgaaacatgttcctgctgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 caaagcaagagggcacatttatagaaggtatctgaactacctgaaacatgttcctgctgg 470

                                                                       
Query: 361 attaattcagagtcattcagtccctttatagttagactgagtagccattggcattgaagt 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 469 attaattcagagtcattcagtccctttatagttagactgagtagccattggcatcgaagt 410

                                                                       
Query: 421 tcttgatattgactctaggtttctctgctattggccagacttctgtttcctcatcttgaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 tcttgatattgactctaggtttctctgctattggccagacttctgtttcctcatcttgaa 350

                                                                       
Query: 481 tctgagccggttaccttttgctaaggtttgagtcttcctggaagggcgaatcctctctct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 349 tctgagccggttaccttttgctaaggtttgagtcttcctggaagggcgaattctctccct 290

                                                                       
Query: 541 aatccatctctctcctcttcagggtgtacttttactcagttttgctgaagttggtgaagt 600
            |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 gatccatctctcttctcttcagggtgtacttttactcagttttgctgaagttggtgaagt 230

                                        
Query: 601 tccgagattcaacgtctttctctaactcc 629
            ||||||||||||||||||||||||||||
Sbjct: 229 cccgagattcaacgtctttctctaactcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1029
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1019
Effective search space:   630761
Effective search space used:   630761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |