BAC Information

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BAC

Clone NameMSMg01-119L18
Chromosome8 (Build37)
Map Location 109,271,951 - 109,272,499
singlet/doubletsinglet
Overlap geneTmco7
Upstream geneGfod2, Ranbp10, Tsnaxip1, Cenpt, LOC100041617, Thap11, Nutf2, Edc4, Nrn1l, Pskh1, Ctrl, Psmb10, Lcat, Slc12a4, Dpep3, Dpep2, Ddx28, Dus2l, Nfatc3, Rbm35b, Lypla3, Slc7a6, Slc7a6os, Prmt7, Smpd3, Zfp90, 6030452D12Rik, Cdh3, LOC100042734, Cdh1
Downstream geneHas3, 5830457O10Rik, Cirh1a, EG234703, Sntb2, Vps4a, Cog8, Nip7, Tmed6, Terf2, EG667847, Cyb5b, LOC100042791, Nfat5, Nqo1, Nob1, Wwp2, LOC100042812, Psmd7, LOC100041744, LOC668038
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-119L18.T7 (MSMg01no119_l18.b1)MSMg01-119L18.TJ (MSMg01no119_l18.g1)
ACCAG330279AG330280
length721719
length of high quality
(start - end)
551 (44 - 594)238 (74 - 311)
definitionCHROMAT_FILE: MSMg01no119_l18.b1 PHD_FILE: MSMg01no119_l18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:26:58 2005CHROMAT_FILE: MSMg01no119_l18.g1 PHD_FILE: MSMg01no119_l18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:26:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAGGCGCGGAAT
TCTTAAACTCTCCCCCTCGCCACTGTACTCTTTCTCCTCTGTGCTCTCTT
AAGCTTCAAATATTGTCTGTATAGAGCAAGCCCAAGTTGCATTCAGGAAC
ATCAAGGCCGTAGGAGCCTGGATGTACCGTTGTGCTTGTTGTGGGCCCTG
CTTCTAGGTAAACAGAACAGCAGTGTGAGGATCTGCACTGTGGGTACCAG
TCTGCATCCATGCCCTTCACTATTAGACTCGACTGCCCGTCCCACGGCAG
GCACAGAGCATCGTCCTCTTCCCTGACTAGGCCACAAGACTTGCTTTGGC
CAAAAAGAAAAAAATGAAAGAGAAGCGGCAGGACAGCTGTCCCTCGAAAT
GCCTCTAGCATTCATGCTTGTCTTCTGACACTTCTGACATCGATATAAGA
ACAGGCCACTGGGCGGGGACAGCCAGGCGCTCGTGCCTAGCACTGCCACT
GTATCTTCCTCATGTGACTGGGTAATATTGTCACATTGCTGGGGCTGGCA
ATAAGCCTCTGGGCATACCAGTGAGGGAACCTCTATGTTCAATTAGCTGA
TATGGGAAGAGCCACCCTAAATGCGGTCAGCACCATTTCCACAGGCTGGG
GTTCCCGAGAAACCACAATAAGCTGCCAGTCACCCTTTTCCGCCTCCCCT
GTGGATGCAGTGTGATCATGC
ATACAGTGCGAGGCCTGGCGGCCGCCTGGTTCCCTACTTGAGGNGAACTA
NAGAATTTCCCAAAACTCCAGNTTTATGTTTAATACCGAATTCTTTACAG
AATGAAATAAAGTTTTCTACTGGAATAAGATGGCCCATTGTCTGTCTTAA
TAAGTTTAGGCAATCCCATGGCATTAAATGCTTGTAGGCAATGATCAATT
ACGTTTTTTGAAGCTTCTCCTGTATGCAGAGAAGCAAAAAGAAATCCTGA
ACAAGTATCAATGCAAACATGTATATATTTTAGCTTTCCAAATTCTGCAT
AATGGGTTATATCCATCCTCCAAATATGATTAGGCATAAGGCCTCTAGGA
TTAACTCCTACATCCGCCACTGGAGATAAAGTAATACATTTAGGACATTG
TTTTAGATCATTCTCGCTTGCTCCTTTGTGATCTTATGTCGGAGTCTTAG
GGTATGGTTAGAAAGATGAAACCTTTCGTGATCCCGTTGCGTCACAGCAA
CCCAATCTGAAACTAAGGCTTCTCCTATTAGAGCTCTGTCAATGCGATCA
TTACCCTCCGCCAGAGGTCCAGGAAGACCACATTGAGACCGTACGTGTCC
AATATAAAATGGATTTTTCCGGGCCAAACCGAAGATTTGTCTTTTCTTAA
AATACACAACCTGAAGGCGAAATTGAAGTTAAACGTACCACAGGTTTCCA
CGTATGTTTACTGACTGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no119_l18.b1 MSMg01no119_l18.b1 CHROMAT_FILE:
MSMg01no119_l18.b1 PHD_FILE: MSMg01no119_l18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:26:58 2005
         (551 letters)



>mm_chr8_109271748_109272699
          Length = 952

 Score =  984 bits (509), Expect = 0.0
 Identities = 539/549 (98%), Gaps = 1/549 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   gaattcttaaactctccccctcgccactgtactctttctcctctgtgctctcttaagctt 63
           ||||||||||||||   ||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 752 gaattcttaaactcaggccctcgccactgtactctttctcctctgtactctcttaagctt 693

                                                                       
Query: 64  caaatattgtctgtatagagcaagcccaagttgcattcaggaacatcaaggccgtaggag 123
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 692 caaatattgtctgtatagagcaagcccaaggtgcattcaggaacatcaaggccgtaggag 633

                                                                       
Query: 124 cctggatgtaccgttgtgcttgttgtgggccctgcttctaggtaaacagaacagcagtgt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 cctggatgtaccgttgtgcttgttgtgggccctgcttctaggtaaacagaacagcagtgt 573

                                                                       
Query: 184 gaggatctgcactgtgggtaccagtctgcatccatgcccttcactattagactcgactgc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 gaggatctgcactgtgggtaccagtctgcatccatgcccttcactattagactcgactgc 513

                                                                       
Query: 244 ccgtcccacggcaggcacagagcatcgtcctcttccctgactaggccacaagacttgctt 303
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 512 ccgtcccacggcaggcacagagcatcgtcctcatccctgactaggccacaagacttgctt 453

                                                                       
Query: 304 tggccaaaaagaaaaaaa-tgaaagagaagcggcaggacagctgtccctcgaaatgcctc 362
           |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 tggccaaaaaaaaaaaaaatgaaagagaagcggcaggacagctgtccctcgaaatgcctc 393

                                                                       
Query: 363 tagcattcatgcttgtcttctgacacttctgacatcgatataagaacaggccactgggcg 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 392 tagcattcatgcttgtcttctgacacttctgacatcgatataagaacaggccactgggca 333

                                                                       
Query: 423 gggacagccaggcgctcgtgcctagcactgccactgtatcttcctcatgtgactgggtaa 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 gggacagccaggcgctcgtgcctagcactgccactgtatcttcctcatgtgactgggtaa 273

                                                                       
Query: 483 tattgtcacattgctggggctggcaataagcctctgggcataccagtgagggaacctcta 542
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 272 tattgtcacattgctggggctggcaataagcctccgggcataccagtgagggaacctcta 213

                    
Query: 543 tgttcaatt 551
           |||||||||
Sbjct: 212 tgttcaatt 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 952
Length adjustment: 10
Effective length of query: 541
Effective length of database: 942
Effective search space:   509622
Effective search space used:   509622
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)