Query= MSMg01no119_n18.b1 MSMg01no119_n18.b1 CHROMAT_FILE:
MSMg01no119_n18.b1 PHD_FILE: MSMg01no119_n18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:07 2005
(551 letters)
>mm_chr8_46490989_46491939
Length = 951
Score = 843 bits (436), Expect = 0.0
Identities = 468/482 (97%), Gaps = 6/482 (1%)
Strand = Plus / Minus
Query: 1 atcatagaaaaagacgttataaaagctgaggacaatgggaagcttcagactgaactaagt 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 480 atcatagaaaaagacgttataaaagctgaggacaatgggaagcttcagactgaagtaagt 421
Query: 61 agcaatagtgacattttgaaggacagacataacttaaatacaattgtgaaattttgcatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 agcaatagtgacattttgaaggacagacataacttaaatacaattgtgaaattttgcatt 361
Query: 121 atcatatttaaagaaaagacattaaaaactataaagtgaaactattaaggaaaaaaatgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 atcatatttaaagaaaagacattaaaaactataaagtgaaactattaaggaaaaaaatgt 301
Query: 181 tatgtaaaggaagagcgataagatgagtttcccacccattagcaattctggagagtggaa 240
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct: 300 tatgtaaaggaagagcgatgagatgagtttctcacccattagcaattctggagagtggaa 241
Query: 241 gacaagaggatgatgcttgcatgattttgcgtgaaatgtaatttttgatttatttttatg 300
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 240 gacaagaggatgatgcttgcatgattttgtgtgaaatgtaatttttgatttatttttatg 181
Query: 301 agtgttcttcctgcatgtgtgtgtgtgtgcactatgcacgcgcattgatgcacatggagg 360
||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 180 agtgttcttcctgca------tgtgtgtgcactatgcacgcacattgatgcacatggagg 127
Query: 361 ccagaatagaatgcagattccctagaactggagttgcaaatgattgtgctgggaattgaa 420
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 126 ccagaatagaatgcagattccctagaactggagttacaaatgattgtgctgggaattgaa 67
Query: 421 ccctgatccttcgcaagggcagagagtgctttccattgccaagcccgatgatgtgtattg 480
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct: 66 ccctgatccttcgcaagggcagagagtgctttccagtgctaagcccgatgatgtgtattg 7
Query: 481 ga 482
||
Sbjct: 6 ga 5
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 951
Length adjustment: 10
Effective length of query: 541
Effective length of database: 941
Effective search space: 509081
Effective search space used: 509081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no119_n18.g1 MSMg01no119_n18.g1 CHROMAT_FILE:
MSMg01no119_n18.g1 PHD_FILE: MSMg01no119_n18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:07 2005
(530 letters)
>mm_chr8_46330230_46331159
Length = 930
Score = 938 bits (485), Expect = 0.0
Identities = 518/529 (97%)
Strand = Plus / Plus
Query: 1 tttgttcagttctgagccccattttttaatagagttatttgattttctgaagttcacctt 60
|||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||
Sbjct: 201 tttgttcagttctgagccccattttttaatggggttatttgattttctgaagtccacctt 260
Query: 61 cttgagttctttatatatgttggatattagtcccctatctgatttgggataggtaaagat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttgagttctttatatatgttggatattagtcccctatctgatttgggataggtaaagat 320
Query: 121 cctttcccaatctgttggtggtctttttgtcttattgacggggtcttttgccttgcagaa 180
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 321 cctttcccaatctgttggtggtctttttgtcttattgacggtatcttttgccttgcagaa 380
Query: 181 actttggagtttcattaggtcccatttgtcaattctcaatcttaccgcacaagccattgc 240
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 381 actttggagtttcattaggtcccatttgtcaattctcaatcttacagcacaagccattgc 440
Query: 241 tgttctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccactttctc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgttctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccactttctc 500
Query: 301 ctctataagtttcagtgtctctggttttatgtgaagttccttgatccacttagatttgac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctctataagtttcagtgtctctggttttatgtgaagttccttgatccacttagatttgac 560
Query: 361 cttagtaaaaggagataagcatggatcgctaatctagtattctaaggcaaactctctgtc 420
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cttagtacaaggagataagtatggatcgctaatctagtattctaaggcaaactctctgtc 620
Query: 421 tcaacagagtgaggccatctttccagaccttccttgtctgtctgttgattagaccccata 480
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcaacagagtgaggccatcttttcagaccttccttgtctgtctgttgattagaccccata 680
Query: 481 gatgagactgtgagtctcctaacgcgaatgttttatctaggtcatctaa 529
|||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct: 681 gatgagactgtgagtctcctaacgtgaatgttttatctaggtcacctaa 729
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 930
Length adjustment: 10
Effective length of query: 520
Effective length of database: 920
Effective search space: 478400
Effective search space used: 478400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
