Query= MSMg01no120_e03.b1 MSMg01no120_e03.b1 CHROMAT_FILE:
MSMg01no120_e03.b1 PHD_FILE: MSMg01no120_e03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:38 2005
(624 letters)
>mm_chr8_106216633_106217658
Length = 1026
Score = 717 bits (371), Expect = 0.0
Identities = 425/443 (95%), Gaps = 4/443 (0%)
Strand = Plus / Minus
Query: 5 gaattcaactgtatacgaa-cacagctgtcccctcagtgtaccaagggagcctaaaccag 63
||||||||||||| | ||| ||| |||||||||||||||||||||| |||||||| ||||
Sbjct: 442 gaattcaactgtagaagaatcacggctgtcccctcagtgtaccaagcgagcctaagccag 383
Query: 64 ggttgatgaagcacagtttttatagagcatctgagacg-ctggcacgtggctgagggcat 122
||||| |||||||||||||||||||||||||||||||| | |||| ||||||||||||||
Sbjct: 382 ggttggtgaagcacagtttttatagagcatctgagacgtc-ggcatgtggctgagggcat 324
Query: 123 gacactcggccagtgaattcacctcacctcagccgcca-ttctccctgcctccacacaag 181
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 323 gacactcggccagtgaattcacctcacctcagccgccatttctccctgcctccacacaag 264
Query: 182 gcttcacatggccagtgcttccggagaacgcagccatgttggttacaatctctctttttt 241
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 263 gcttcacatggccagtgcttccagagaacgcagccatgttggttacaatctctctttttt 204
Query: 242 agggaggtgcttcttcagtcagtaaagcgcttgccatgcaagacccgtgttctagtcccc 301
||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct: 203 agggaggtgcttcttcagtcagtaaagtgcttgccatgcaagacccgcgttctagtcccc 144
Query: 302 agaatccgtgtaaaatcaacacagctgggcaccgcagcatatgcctgtgatccaggtgct 361
||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 143 agaatccatgtaaaatcaacacagctgggcaccgcagcgtatgcctgtgatccaggtgct 84
Query: 362 gcaaaggaagcgacaggaggattcctgggacattcagaccagccagtctaagggaatcag 421
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83 gcagaggaagcgacaggaggattcctgggacattcagaccagccagtctaagggaatcag 24
Query: 422 tgctccaggtacagcaagagatg 444
|||||||||| ||||||||||||
Sbjct: 23 tgctccaggttcagcaagagatg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1026
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1016
Effective search space: 623824
Effective search space used: 623824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no120_e03.g1 MSMg01no120_e03.g1 CHROMAT_FILE:
MSMg01no120_e03.g1 PHD_FILE: MSMg01no120_e03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:38 2005
(573 letters)
>mm_chr8_106141417_106142389
Length = 973
Score = 1015 bits (525), Expect = 0.0
Identities = 564/581 (97%), Gaps = 8/581 (1%)
Strand = Plus / Plus
Query: 1 cttgtgtatataaagacttggagcctggggcaggtaagaacatccccattaacacgacaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 200 cttgtgtatataaagacttggagcctggggcaggtaagaacatccccattaacacaacaa 259
Query: 61 gacaggctggagatgtagctcagctgggataatgcttgcctagcatacacaatctcatcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gacaggctggagatgtagctcagctgggataatgcttgcctagcatacacaatctcatcc 319
Query: 121 agtatccagtaacctgagtgtgatggttcctgcttgtaatcccagcattagccggatgaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 agtatccagtaacctgagtgtgatggttcctgcttgtaatcccagcattagccggatgaa 379
Query: 181 ggtagaaggatcagaagttcaggacaggtcatcttcagttacttgacaagtttgaggcca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ggtagaaggatcagaagttcaggacaggtcatcttcagttacttgacaagtttgaggcca 439
Query: 241 gattcaggagatattttttt-caacagagaaagaagagaaggggaggagaggagaagaaa 299
|||| ||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gattaaggggattttttttttcaacagagaaagaagagaaggggaggagaggagaagaaa 499
Query: 300 gcagggcacctccagcaccaattaggctctttgaaaggtccattgtatgtgatagacttt 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gcagggcacctccagcaccaattaggctctttgaaaggtccattgtatgtgatagacttt 559
Query: 360 aaactctaaggtaccaacttcctgttcccccatgcagcgcctgaaatcattagagggaat 419
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 560 aaactctaaggtaccaacttcctgttcccccatgcagcgcctgaaaccattagagggaat 619
Query: 420 gttctggaaaatgccactccctctgtcatgtcacaggccacaattgtcatctgcatttta 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 620 gttctggaaaatgccactccctctgtcatgtcacaggccacaattgtcatctgcatttca 679
Query: 480 gcaaaacctggtctttttttttt-------atgtgaatacaaagtaagtgccctgcatgc 532
||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct: 680 gcaaaacctggtctttttttttttttttttatgcgaatacaaagtaagtgccctgcatgg 739
Query: 533 cactcaggaggaacactctgtctctgattaatccttaatgt 573
||||| |||||||||||||||||||||||||||||||||||
Sbjct: 740 cactcgggaggaacactctgtctctgattaatccttaatgt 780
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 973
Length adjustment: 10
Effective length of query: 563
Effective length of database: 963
Effective search space: 542169
Effective search space used: 542169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
